Difference between revisions of "SDPDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_pydx5p TransportSeed_pydx5p] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == React...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinyl-diaminopimelate desuccinyl...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_pydx5p TransportSeed_pydx5p] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Succinyl-diaminopimelate desuccinylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pydx5p]][e] '''=>''' 1.0 [[pydx5p]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[sl26da]][c] '''=>''' 1.0 [[26dap_LL]][c] '''+''' 1.0 [[succ]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Pyridoxal 5'-phosphate[e] '''=>''' 1.0 Pyridoxal 5'-phosphate[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] '''=>''' 1.0 LL-2,6-Diaminoheptanedioate[c] '''+''' 1.0 Succinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF3178]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 +
** '''13''' reactions found over '''34''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-import_from_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22608 22608]
 +
* BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
 +
* MetaNetX (MNX) Equation : MNXR104300
 +
* KEGG Reaction : R02734
 +
* EC Number : 3.5.1.18
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=Succinyl-diaminopimelate desuccinylase}}
−
{{#set: reconstruction category=manual}}
+
{{#set: gene associated=EF3178}}
−
{{#set: reconstruction source=manual-import_from_medium}}
+
{{#set: in pathway=map01100|map01230|map01120|map00300}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:29, 21 March 2018

Reaction SDPDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinyl-diaminopimelate desuccinylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] => 1.0 LL-2,6-Diaminoheptanedioate[c] + 1.0 Succinate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
  • MetaNetX (MNX) Equation : MNXR104300
  • KEGG Reaction : R02734
  • EC Number : 3.5.1.18




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