Difference between revisions of "NIabc"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GDPMNP GDPMNP] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose phyrophosphatase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NIabc NIabc] == * direction: ** LEFT-TO-RIGHT * common name: ** Nickel transport via ABC system * S...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GDPMNP GDPMNP] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NIabc NIabc] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** GDP-mannose phyrophosphatase
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** Nickel transport via ABC system
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[gdpmann]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 2.0 [[h]][c] '''+''' 1.0 [[man1p]][c] '''+''' 1.0 [[gmp]][c]
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** 1.0 [[ni2]][e] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[ni2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 GDP-D-mannose[c] '''+''' 1.0 H2O H2O[c] '''=>''' 2.0 H+[c] '''+''' 1.0 D-Mannose 1-phosphate[c] '''+''' 1.0 GMP C10H12N5O8P[c]
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** 1.0 Nickel[e] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Nickel[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2696]]
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* Gene: [[EF1352]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-2_reaction_to_add_delete]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00500]]: [http://www.genome.jp/dbget-bin/www_bget?map00500 map00500]
 
−
** '''15''' reactions found over '''81''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
 
−
** '''22''' reactions found over '''63''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-2_reaction_to_add_delete]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27978 27978]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15557#1 15557#1]
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* BioCyc : META:RXN0-5108
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* MetaNetX (MNX) Equation : MNXR101959
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* MetaNetX (MNX) Equation : MNXR100092
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* EC Number : 3.6.3.24
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* KEGG Reaction : R00881
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* BioCyc : META:3.6.3.24-RXN
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* EC Number : 3.6.1.-
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=GDP-mannose phyrophosphatase}}
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{{#set: common name=Nickel transport via ABC system}}
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{{#set: gene associated=EF2696}}
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{{#set: gene associated=EF1352}}
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{{#set: in pathway=map01100|map00500|map01110|map00051|map00230}}
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{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=manual-2_reaction_to_add_delete}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}

Latest revision as of 15:30, 21 March 2018

Reaction NIabc

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Nickel transport via ABC system
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nickel[e] + 1.0 H2O H2O[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 Phosphate[c] + 1.0 H+[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 Nickel[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR101959
  • EC Number : 3.6.3.24
  • BioCyc : META:3.6.3.24-RXN




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