Difference between revisions of "APATi"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate dehydrogenase * Synonym(s): =...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/APATi APATi] == * direction: ** REVERSIBLE * common name: ** Tetrahydrodipicolinate acetyltransfera...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/APATi APATi] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Pyruvate dehydrogenase
+
** Tetrahydrodipicolinate acetyltransferase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pyr]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[coa]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[accoa]][c]
+
** 1.0 [[accoa]][c] '''+''' 1.0 [[thdp]][c] '''+''' 1.0 [[h2o]][c] '''<=>''' 1.0 [[acamoxm]][c] '''+''' 1.0 [[coa]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Pyruvate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Coenzyme A[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Acetyl-CoA[c]
+
** 1.0 Acetyl-CoA[c] '''+''' 1.0 2,3,4,5-Tetrahydrodipicolinate[c] '''+''' 1.0 H2O H2O[c] '''<=>''' 1.0 N Acetyl L 2 amino 6 oxopimelate C9H11NO6[c] '''+''' 1.0 Coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1354]]
+
* Gene: [[EF1133]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF1353]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF1355]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF1356]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''111''' reactions found over '''715''' reactions in the full pathway
 
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''50''' reactions found over '''220''' reactions in the full pathway
 
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 
−
** '''31''' reactions found over '''163''' reactions in the full pathway
 
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 
−
** '''24''' reactions found over '''149''' reactions in the full pathway
 
−
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 
−
** '''9''' reactions found over '''70''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''156''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.2.1
 
−
* BioCyc : META:PYRUVDEH-RXN
 
−
* MetaNetX (MNX) Equation : MNXR102425
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13085 13085]
−
* Reactome : REACT_R-ATH-71397
+
* BioCyc : META:2.3.1.89-RXN
−
* KEGG Reaction : R00209
+
* MetaNetX (MNX) Equation : MNXR95864
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R04364
−
{{#set: common name=Pyruvate dehydrogenase}}
+
* EC Number : 2.3.1.-
−
{{#set: gene associated=EF1354|EF1353|EF1355|EF1356}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=map01100|map01110|map01120|map01200|map00620|map00010|map00020|map01130}}
+
{{#set: common name=Tetrahydrodipicolinate acetyltransferase}}
 +
{{#set: gene associated=EF1133}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:32, 21 March 2018

Reaction APATi

  • direction:
    • REVERSIBLE
  • common name:
    • Tetrahydrodipicolinate acetyltransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Acetyl-CoA[c] + 1.0 2,3,4,5-Tetrahydrodipicolinate[c] + 1.0 H2O H2O[c] <=> 1.0 N Acetyl L 2 amino 6 oxopimelate C9H11NO6[c] + 1.0 Coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:2.3.1.89-RXN
  • MetaNetX (MNX) Equation : MNXR95864
  • KEGG Reaction : R04364
  • EC Number : 2.3.1.-




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