Difference between revisions of "HIBD manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1] == * direction: ** LEFT-TO-RIGHT * common name: ** Argininosuccinate synthase * Sy...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HIBD_manual HIBD_manual] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/HIBD_manual HIBD_manual] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Argininosuccinate synthase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[citr__L]][c] '''+''' 1.0 [[asp__L]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[amp]][c] '''+''' 1.0 [[argsuc]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[3hmp]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[mmalsa__R]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Citrulline[c] '''+''' 1.0 L-Aspartate[c] '''=>''' 1.0 Diphosphate[c] '''+''' 2.0 H+[c] '''+''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 N(omega)-(L-Arginino)succinate[c]
+
**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF2889]]
 +
** Source: [[manual-4_newreactions]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
 
−
** '''12''' reactions found over '''65''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''83''' reactions found over '''228''' reactions in the full pathway
 
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
 
−
** '''27''' reactions found over '''93''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''156''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[manual]]
−
** [[meneco]]:
+
** Source: [[manual-4_newreactions]]
−
*** [[added for gapfilling]]
+
*** Comment: [[manual curation]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 6.3.4.5
 
−
* BioCyc : META:ARGSUCCINSYN-RXN
 
−
* MetaNetX (MNX) Equation : MNXR95949
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
 
−
* Reactome : REACT_R-BTA-70577
 
−
* KEGG Reaction : R01954
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Argininosuccinate synthase}}
+
{{#set: gene associated=EF2889}}
−
{{#set: in pathway=map01100|map00220|map01110|map01230|map00250|map01130}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction source=manual-4_newreactions}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction comment=manual curation}}

Latest revision as of 16:34, 21 March 2018

Reaction HIBD_manual

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

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