Difference between revisions of "HIBD manual"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTRS CYSTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Cysteinyl-tRNA synthetase * Synon...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HIBD_manual HIBD_manual] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTRS CYSTRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/HIBD_manual HIBD_manual] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** Cysteinyl-tRNA synthetase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[atp]][c] '''+''' 1.0 [[trnacys]][c] '''+''' 1.0 [[cys__L]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[ppi]][c] '''+''' 1.0 [[cystrna]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[3hmp]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[mmalsa__R]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 TRNA(Cys)[c] '''+''' 1.0 L-Cysteine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 Diphosphate[c] '''+''' 1.0 L-Cysteinyl-tRNA(Cys)[c]
+
**
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0045]]
+
* Gene: [[EF2889]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[manual-4_newreactions]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
 
** '''23''' reactions found over '''49''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
+
* Category: [[manual]]
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[manual-4_newreactions]]
*** Tool: [[pantograph]]
+
*** Comment: [[manual curation]]
** Source: [[orthology-l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
* Reactome : REACT_R-HSA-379887
 
* MetaNetX (MNX) Equation : MNXR97018
 
* KEGG Reaction : R03650
 
* EC Number : 6.1.1.15
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Cysteinyl-tRNA synthetase}}
+
{{#set: gene associated=EF2889}}
{{#set: gene associated=EF0045}}
+
{{#set: in pathway=}}
{{#set: in pathway=map00970}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-4_newreactions}}
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction comment=manual curation}}
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 15:34, 21 March 2018

Reaction HIBD_manual

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links