Difference between revisions of "CITL"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK8 NDPK8] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dAD...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CITL CITL] == * direction: ** LEFT-TO-RIGHT * common name: ** Citrate lyase * Synonym(s): == React...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK8 NDPK8] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CITL CITL] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Nucleoside-diphosphate kinase (ATP:dADP)
+
** Citrate lyase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[dadp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[datp]][c]
+
** 1.0 [[cit]][c] '''=>''' 1.0 [[oaa]][c] '''+''' 1.0 [[ac]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DADP C10H12N5O9P2[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DATP C10H12N5O12P3[c]
+
** 1.0 Citrate[c] '''=>''' 1.0 Oxaloacetate[c] '''+''' 1.0 Acetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0228]]
+
* Gene: [[EF3321]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [[EF1036]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
* Gene: [[EF3320]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF3319]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF3318]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF3315]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF3322]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''82''' reactions found over '''244''' reactions in the full pathway
 
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
 
** Source: [[orthology-l_plantarum_wcfs1]]
Line 42: Line 40:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10760 10760]
−
* BioCyc : META:DADPKIN-RXN
+
* BioCyc : META:CITLY-RXN
−
* MetaNetX (MNX) Equation : MNXR101940
+
* MetaNetX (MNX) Equation : MNXR96731
−
* KEGG Reaction : R01137
+
* KEGG Reaction : R00362
−
* EC Number : 2.7.4.6
+
* EC Number : 4.1.3.6
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dADP)}}
+
{{#set: common name=Citrate lyase}}
−
{{#set: gene associated=EF0228|EF1036}}
+
{{#set: gene associated=EF3321|EF3320|EF3319|EF3318|EF3315|EF3322}}
−
{{#set: in pathway=map00240|map01100|map01110|map00230|map01130}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:35, 21 March 2018

Reaction CITL

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Citrate lyase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Citrate[c] => 1.0 Oxaloacetate[c] + 1.0 Acetate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:CITLY-RXN
  • MetaNetX (MNX) Equation : MNXR96731
  • KEGG Reaction : R00362
  • EC Number : 4.1.3.6




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=CITL&oldid=10725"