Difference between revisions of "ADPDS manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/KG6PDC KG6PDC] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-keto-L-gulonate 6-phosphate dec...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADPDS_manual ADPDS_manual] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/KG6PDC KG6PDC] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ADPDS_manual ADPDS_manual] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-keto-L-gulonate 6-phosphate decarboxylase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[3dhgulnp]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[xu5p__L]][c]
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** 1.0 [[n6all26d]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[ac]][c] '''+''' 1.0 [[26dap_LL]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 3-keto-L-gulonate-6-phosphate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 L-Xylulose 5-phosphate[c]
+
** 1.0 N6-Acetyl-LL-2,6-diaminoheptanedioate[c] '''+''' 1.0 H+[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Acetate[c] '''+''' 1.0 LL-2,6-Diaminoheptanedioate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1129]]
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* Gene: [[EF1134]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** Source: [[manual-4_newreactions]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
 
−
** '''15''' reactions found over '''54''' reactions in the full pathway
 
−
* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
 
−
** '''7''' reactions found over '''50''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''111''' reactions found over '''715''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-4_newreactions]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[manual curation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14353 14353]
 
−
* BioCyc : META:RXN0-705
 
−
* MetaNetX (MNX) Equation : MNXR100935
 
−
* KEGG Reaction : R07125
 
−
* EC Number : 4.1.1.85
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-keto-L-gulonate 6-phosphate decarboxylase}}
+
{{#set: gene associated=EF1134}}
−
{{#set: gene associated=EF1129}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=map01100|map00040|map00053|map01120}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-4_newreactions}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=manual curation}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+

Latest revision as of 15:36, 21 March 2018

Reaction ADPDS_manual

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 N6-Acetyl-LL-2,6-diaminoheptanedioate[c] + 1.0 H+[c] + 1.0 H2O H2O[c] => 1.0 Acetate[c] + 1.0 LL-2,6-Diaminoheptanedioate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=ADPDS_manual&oldid=10819"