Difference between revisions of "SERD L"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/fmnh2 fmnh2] == * common name: ** Reduced FMN * Synonym(s): == Reaction(s) known to consume...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] == * direction: ** LEFT-TO-RIGHT * common name: ** L-serine deaminase * Synonym(s):...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] == |
| + | * direction: | ||
| + | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** L-serine deaminase |
* Synonym(s): | * Synonym(s): | ||
| − | == Reaction(s) | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | * [[ | + | ** 1.0 [[ser__L]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[nh4]][c] |
| − | == | + | * With common name(s): |
| − | == | + | ** 1.0 L-Serine[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 Ammonium[c] |
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[EF0099]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | * Gene: [[EF2722]] | ||
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | * Gene: [[EF0098]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | * Gene: [[EF2721]] | ||
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130] | ||
| + | ** '''135''' reactions found over '''694''' reactions in the full pathway | ||
| + | * [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110] | ||
| + | ** '''179''' reactions found over '''1054''' reactions in the full pathway | ||
| + | * [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] | ||
| + | ** '''23''' reactions found over '''133''' reactions in the full pathway | ||
| + | * [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290] | ||
| + | ** '''9''' reactions found over '''49''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | {{#set: common name= | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19169 19169] |
| + | * BioCyc : META:4.3.1.17-RXN | ||
| + | * MetaNetX (MNX) Equation : MNXR104339 | ||
| + | * KEGG Reaction : R00220 | ||
| + | * EC Number : 4.3.1.15 | ||
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=L-serine deaminase}} | ||
| + | {{#set: gene associated=EF0099|EF2722|EF0098|EF2721}} | ||
| + | {{#set: in pathway=map01100|map01130|map01110|map00260|map00290}} | ||
| + | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}} | ||
| + | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 15:38, 21 March 2018
Contents
Reaction SERD_L
- direction:
- LEFT-TO-RIGHT
- common name:
- L-serine deaminase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 L-Serine[c] => 1.0 Pyruvate[c] + 1.0 Ammonium[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: EF0099
- Gene: EF2722
- Gene: EF0098
- Source: orthology-l_plantarum_wcfs1
- Gene: EF2721
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map01130: map01130
- 135 reactions found over 694 reactions in the full pathway
- map01110: map01110
- 179 reactions found over 1054 reactions in the full pathway
- map00260: map00260
- 23 reactions found over 133 reactions in the full pathway
- map00290: map00290
- 9 reactions found over 49 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-b_subtilis_subsp_subtilis_str168
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- RHEA:
- BioCyc : META:4.3.1.17-RXN
- MetaNetX (MNX) Equation : MNXR104339
- KEGG Reaction : R00220
- EC Number : 4.3.1.15
