Difference between revisions of "NDPK5"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SHSL1 SHSL1] == * direction: ** LEFT-TO-RIGHT * common name: ** O-succinylhomoserine lyase (L-cyste...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK5 NDPK5] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dGD...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SHSL1 SHSL1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK5 NDPK5] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** O-succinylhomoserine lyase (L-cysteine)
+
** Nucleoside-diphosphate kinase (ATP:dGDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[suchms]][c] '''+''' 1.0 [[cys__L]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[succ]][c] '''+''' 1.0 [[cyst__L]][c]
+
** 1.0 [[dgdp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[dgtp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 O-Succinyl-L-homoserine[c] '''+''' 1.0 L-Cysteine[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Succinate[c] '''+''' 1.0 L-Cystathionine[c]
+
** 1.0 DGDP C10H12N5O10P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DGTP C10H12N5O13P3[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0290]]
+
* Gene: [[EF1036]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0228]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
−
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
+
−
** '''6''' reactions found over '''35''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00920]]: [http://www.genome.jp/dbget-bin/www_bget?map00920 map00920]
+
−
** '''5''' reactions found over '''56''' reactions in the full pathway
+
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
−
** '''25''' reactions found over '''135''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''83''' reactions found over '''228''' reactions in the full pathway
+
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27690 27690]
−
* BioCyc : META:O-SUCCHOMOSERLYASE-RXN
+
* BioCyc : META:DGDPKIN-RXN
−
* MetaNetX (MNX) Equation : MNXR104380
+
* MetaNetX (MNX) Equation : MNXR96118
−
* KEGG Reaction : R03260
+
* KEGG Reaction : R01857
−
* EC Number : 2.5.1.48
+
* EC Number : 2.7.4.6
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=O-succinylhomoserine lyase (L-cysteine)}}
+
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dGDP)}}
−
{{#set: gene associated=EF0290}}
+
{{#set: gene associated=EF1036|EF0228}}
−
{{#set: in pathway=map01100|map00450|map01110|map00920|map00270|map01230|map01130}}
+
{{#set: in pathway=map00240|map01130|map01110|map01100|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Latest revision as of 15:38, 21 March 2018

Reaction NDPK5

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:dGDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DGDP C10H12N5O10P2[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 DGTP C10H12N5O13P3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DGDPKIN-RXN
  • MetaNetX (MNX) Equation : MNXR96118
  • KEGG Reaction : R01857
  • EC Number : 2.7.4.6




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