Difference between revisions of "TMDPP"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/OPMEACPD OPMEACPD] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-Oxo-pimeloyl-[ACP] methyl e...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == * direction: ** REVERSIBLE * common name: ** Thymidine phosphorylase * Synonym(s):...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == |
* direction: | * direction: | ||
| − | ** | + | ** REVERSIBLE |
* common name: | * common name: | ||
| − | ** | + | ** Thymidine phosphorylase |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[pi]][c] '''+''' 1.0 [[thymd]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[thym]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 Phosphate[c] '''+''' 1.0 Thymidine C10H14N2O5[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Thymine C5H6N2O2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[EF0173]] |
| − | ** [[ | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | |
| − | ** [[ | + | |
== Pathways == | == Pathways == | ||
| + | * [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240] | ||
| + | ** '''82''' reactions found over '''244''' reactions in the full pathway | ||
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
** '''460''' reactions found over '''2349''' reactions in the full pathway | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| − | * [[ | + | * [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983] |
| − | ** ''' | + | ** '''22''' reactions found over '''72''' reactions in the full pathway |
| − | + | ||
| − | + | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]]: | + | * Category: [[orthology]] |
| − | ** [[pantograph]]: | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | * BioCyc : META: | + | * RHEA: |
| − | * MetaNetX (MNX) Equation : | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037] |
| − | * KEGG Reaction : | + | * BioCyc : META:THYM-PHOSPH-RXN |
| − | * EC Number : 4.2. | + | * MetaNetX (MNX) Equation : MNXR104887 |
| − | {{#set: direction= | + | * KEGG Reaction : R01570 |
| − | {{#set: common name= | + | * EC Number : 2.4.2.2 |
| − | {{#set: gene associated= | + | {{#set: direction=REVERSIBLE}} |
| − | {{#set: in pathway= | + | {{#set: common name=Thymidine phosphorylase}} |
| + | {{#set: gene associated=EF0173}} | ||
| + | {{#set: in pathway=map00240|map01100|map00983}} | ||
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
| − | |||
Latest revision as of 15:39, 21 March 2018
Contents
Reaction TMDPP
- direction:
- REVERSIBLE
- common name:
- Thymidine phosphorylase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Phosphate[c] + 1.0 Thymidine C10H14N2O5[c] <=> 1.0 2-Deoxy-D-ribose 1-phosphate[c] + 1.0 Thymine C5H6N2O2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: EF0173
Pathways
- map00240: map00240
- 82 reactions found over 244 reactions in the full pathway
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00983: map00983
- 22 reactions found over 72 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-b_subtilis_subsp_subtilis_str168
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- RHEA:
- BioCyc : META:THYM-PHOSPH-RXN
- MetaNetX (MNX) Equation : MNXR104887
- KEGG Reaction : R01570
- EC Number : 2.4.2.2
