Difference between revisions of "NDPK4"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/BLUB BLUB] == * direction: ** LEFT-TO-RIGHT * common name: ** Cobalamin biosynthesis * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK4 NDPK4] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dTD...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/BLUB BLUB] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK4 NDPK4] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Cobalamin biosynthesis
+
** Nucleoside-diphosphate kinase (ATP:dTDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[fmnh2]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[dmbzid]][c] '''+''' 1.0 [[urea]][c] '''+''' 1.0 [[doxopa]][c] '''+''' 1.0 [[e4p]][c]
+
** 1.0 [[dtdp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[dttp]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Reduced FMN[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 5,6-Dimethylbenzimidazole[c] '''+''' 1.0 Urea CH4N2O[c] '''+''' 1.0 1,2-Dioxopropanoic acid[c] '''+''' 1.0 D-Erythrose 4-phosphate[c]
+
** 1.0 DTDP C10H13N2O11P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 DTTP C10H13N2O14P3[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF1036]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0228]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR96311
+
* RHEA:
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
−
{{#set: common name=Cobalamin biosynthesis}}
+
* BioCyc : META:DTDPKIN-RXN
−
{{#set: in pathway=}}
+
* MetaNetX (MNX) Equation : MNXR101937
−
{{#set: reconstruction category=gap-filling}}
+
* KEGG Reaction : R02093
−
{{#set: reconstruction tool=meneco}}
+
* EC Number : 2.7.4.6
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dTDP)}}
 +
{{#set: gene associated=EF1036|EF0228}}
 +
{{#set: in pathway=map01100|map01130|map01110|map00240|map00230}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:40, 21 March 2018

Reaction NDPK4

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:dTDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DTDP C10H13N2O11P2[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 DTTP C10H13N2O14P3[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DTDPKIN-RXN
  • MetaNetX (MNX) Equation : MNXR101937
  • KEGG Reaction : R02093
  • EC Number : 2.7.4.6




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