Difference between revisions of "ExchangeSeed cit"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP4 PUNP4] == * direction: ** REVERSIBLE * common name: ** Purine-nucleoside phosphorylase (Deoxy...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_cit ExchangeSeed_cit] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP4 PUNP4] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ExchangeSeed_cit ExchangeSeed_cit] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** Purine-nucleoside phosphorylase (Deoxyguanosine)
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[dgsn]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[gua]][c]
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** 1.0 [[cit]][C-BOUNDARY] '''<=>''' 1.0 [[cit]][e]
 
* With common name(s):
 
* With common name(s):
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** 1.0 Deoxyguanosine[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Guanine[c]
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** 1.0 Citrate[C-BOUNDARY] '''<=>''' 1.0 Citrate[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0187]]
 
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** [[pantograph]]-[[l_plantarum_wcfs1]]
 
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
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* [[EF0186]]
 
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
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** '''83''' reactions found over '''244''' reactions in the full pathway
 
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
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** '''508''' reactions found over '''2349''' reactions in the full pathway
 
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* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
 
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** '''22''' reactions found over '''72''' reactions in the full pathway
 
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* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''98''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-import_from_medium]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
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*** [[l_plantarum_wcfs1]]
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−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27738 27738]
 
−
* BioCyc : META:DEOXYGUANPHOSPHOR-RXN
 
−
* MetaNetX (MNX) Equation : MNXR103346
 
−
* KEGG Reaction : R01969
 
−
* EC Number : 2.4.2.1
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Purine-nucleoside phosphorylase (Deoxyguanosine)}}
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{{#set: in pathway=}}
−
{{#set: gene associated=EF0187|EF0186}}
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{{#set: reconstruction category=manual}}
−
{{#set: in pathway=map00240|map01100|map00983|map00230}}
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{{#set: reconstruction source=manual-import_from_medium}}
−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Latest revision as of 15:40, 21 March 2018

Reaction ExchangeSeed_cit

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 cit[C-BOUNDARY] <=> 1.0 cit[e]
  • With common name(s):
    • 1.0 Citrate[C-BOUNDARY] <=> 1.0 Citrate[e]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=ExchangeSeed_cit&oldid=10996"