Difference between revisions of "GLYO1"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNTR3 RNTR3] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside triphosphate reducta...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine oxidase * Synonym(s): == R...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNTR3 RNTR3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ribonucleoside triphosphate reductase  CTP
+
** Glycine oxidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[trdrd]][c] '''+''' 1.0 [[ctp]][c] '''=>''' 1.0 [[dctp]][c] '''+''' 1.0 [[trdox]][c] '''+''' 1.0 [[h2o]][c]
+
** 1.0 [[gly]][c] '''+''' 1.0 [[o2]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[glx]][c] '''+''' 1.0 [[nh4]][c] '''+''' 1.0 [[h2o2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Reduced thioredoxin[c] '''+''' 1.0 CTP C9H12N3O14P3[c] '''=>''' 1.0 DCTP C9H12N3O13P3[c] '''+''' 1.0 Oxidized thioredoxin[c] '''+''' 1.0 H2O H2O[c]
+
** 1.0 Glycine[c] '''+''' 1.0 O2 O2[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Glyoxylate[c] '''+''' 1.0 Ammonium[c] '''+''' 1.0 Hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1491]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
* [[EF2754]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''83''' reactions found over '''244''' reactions in the full pathway
 
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''98''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR104076
+
* EC Number : 1.4.3.19
−
* KEGG Reaction : R02022
+
* BioCyc : META:1.4.3.19-RXN
−
* EC Number : 1.17.4.2
+
* MetaNetX (MNX) Equation : MNXR100352
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11532 11532]
 +
* Reactome : REACT_R-BTA-389821
 +
* KEGG Reaction : R00366
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ribonucleoside triphosphate reductase  CTP }}
+
{{#set: common name=Glycine oxidase}}
−
{{#set: gene associated=EF1491|EF2754}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=map00240|map01100|map00230}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=l_plantarum_wcfs1}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 15:41, 21 March 2018

Reaction GLYO1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycine oxidase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Glycine[c] + 1.0 O2 O2[c] + 1.0 H2O H2O[c] => 1.0 Glyoxylate[c] + 1.0 Ammonium[c] + 1.0 Hydrogen peroxide[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • EC Number : 1.4.3.19
  • BioCyc : META:1.4.3.19-RXN
  • MetaNetX (MNX) Equation : MNXR100352
  • RHEA:
  • Reactome : REACT_R-BTA-389821
  • KEGG Reaction : R00366




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