Difference between revisions of "GLYO1"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADK1 ADK1] == * direction: ** REVERSIBLE * common name: ** Adenylate kinase * Synonym(s): == React...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycine oxidase * Synonym(s): == R...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ADK1 ADK1] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYO1 GLYO1] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Adenylate kinase
+
** Glycine oxidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[amp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 2.0 [[adp]][c]
+
** 1.0 [[gly]][c] '''+''' 1.0 [[o2]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[glx]][c] '''+''' 1.0 [[nh4]][c] '''+''' 1.0 [[h2o2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 2.0 ADP C10H12N5O10P2[c]
+
** 1.0 Glycine[c] '''+''' 1.0 O2 O2[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Glyoxylate[c] '''+''' 1.0 Ammonium[c] '''+''' 1.0 Hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0228]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
 
−
** '''11''' reactions found over '''24''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
−
*** [[l_plantarum_wcfs1]]
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**** Comment: [[added for gapfilling]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.7.4.3
+
* EC Number : 1.4.3.19
−
* BioCyc : META:ADENYL-KIN-RXN
+
* BioCyc : META:1.4.3.19-RXN
−
* MetaNetX (MNX) Equation : MNXR95450
+
* MetaNetX (MNX) Equation : MNXR100352
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11532 11532]
−
* Reactome : REACT_R-ATH-110144
+
* Reactome : REACT_R-BTA-389821
−
* KEGG Reaction : R00127
+
* KEGG Reaction : R00366
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Adenylate kinase}}
+
{{#set: common name=Glycine oxidase}}
−
{{#set: gene associated=EF0228}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=map01100|map00730|map01110|map00230|map01130}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 15:41, 21 March 2018

Reaction GLYO1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycine oxidase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Glycine[c] + 1.0 O2 O2[c] + 1.0 H2O H2O[c] => 1.0 Glyoxylate[c] + 1.0 Ammonium[c] + 1.0 Hydrogen peroxide[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • EC Number : 1.4.3.19
  • BioCyc : META:1.4.3.19-RXN
  • MetaNetX (MNX) Equation : MNXR100352
  • RHEA:
  • Reactome : REACT_R-BTA-389821
  • KEGG Reaction : R00366




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