Difference between revisions of "RPI"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] == * direction: ** REVERSIBLE * common name: ** Thymidine phosphorylase * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RPI RPI] == * direction: ** REVERSIBLE * common name: ** Ribose-5-phosphate isomerase * Synonym(s):...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDPP TMDPP] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RPI RPI] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** Thymidine phosphorylase
+
** Ribose-5-phosphate isomerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pi]][c] '''+''' 1.0 [[thymd]][c] '''<=>''' 1.0 [[2dr1p]][c] '''+''' 1.0 [[thym]][c]
+
** 1.0 [[r5p]][c] '''<=>''' 1.0 [[ru5p__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Phosphate[c] '''+''' 1.0 Thymidine C10H14N2O5[c] '''<=>''' 1.0 2-Deoxy-D-ribose 1-phosphate[c] '''+''' 1.0 Thymine C5H6N2O2[c]
+
** 1.0 Alpha-D-Ribose 5-phosphate[c] '''<=>''' 1.0 D-Ribulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0173]]
+
* Gene: [[EF0197]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF1835]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF1834]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''83''' reactions found over '''244''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''22''' reactions found over '''72''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
 +
** '''22''' reactions found over '''63''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR104084
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037]
+
* EC Number : 5.3.1.6
−
* BioCyc : META:THYM-PHOSPH-RXN
+
−
* MetaNetX (MNX) Equation : MNXR104887
+
−
* KEGG Reaction : R01570
+
−
* EC Number : 2.4.2.2
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Thymidine phosphorylase}}
+
{{#set: common name=Ribose-5-phosphate isomerase}}
−
{{#set: gene associated=EF0173}}
+
{{#set: gene associated=EF0197|EF1835|EF1834}}
−
{{#set: in pathway=map00240|map01100|map00983}}
+
{{#set: in pathway=map01100|map01110|map01120|map00051|map00710|map01130|map00030}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:42, 21 March 2018

Reaction RPI

  • direction:
    • REVERSIBLE
  • common name:
    • Ribose-5-phosphate isomerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Alpha-D-Ribose 5-phosphate[c] <=> 1.0 D-Ribulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104084
  • EC Number : 5.3.1.6




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