Difference between revisions of "SPMS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/OCTNLL OCTNLL] == * direction: ** LEFT-TO-RIGHT * common name: ** Octanoate non-lipoylated apo doma...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine synthase * Synonym(s): ==...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/OCTNLL OCTNLL] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Octanoate non-lipoylated apo domain ligase
+
** Spermidine synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[octa]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[octapb]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[ptrc]][c] '''+''' 1.0 [[ametam]][c] '''=>''' 1.0 [[spmd]][c] '''+''' 1.0 [[5mta]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Octanoate (n-C8:0)[c] '''+''' 1.0 H+[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 Octanoate (protein bound)[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 Putrescine[c] '''+''' 1.0 S-Adenosylmethioninamine[c] '''=>''' 1.0 Spermidine[c] '''+''' 1.0 5-Methylthioadenosine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF2741]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
* [[EF0650]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 +
** '''25''' reactions found over '''135''' reactions in the full pathway
 +
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 +
** '''10''' reactions found over '''39''' reactions in the full pathway
 +
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 +
** '''22''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
 +
** '''8''' reactions found over '''91''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR102155
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
 +
* EC Number : 2.5.1.16
 +
* MetaNetX (MNX) Equation : MNXR95860
 +
* KEGG Reaction : R01920
 +
* BioCyc : META:SPERMIDINESYN-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Octanoate non-lipoylated apo domain ligase}}
+
{{#set: common name=Spermidine synthase}}
−
{{#set: gene associated=EF2741|EF0650}}
+
{{#set: in pathway=map01100|map00270|map00480|map00330|map00410}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 15:43, 21 March 2018

Reaction SPMS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Spermidine synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Putrescine[c] + 1.0 S-Adenosylmethioninamine[c] => 1.0 Spermidine[c] + 1.0 5-Methylthioadenosine[c] + 1.0 H+[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.5.1.16
  • MetaNetX (MNX) Equation : MNXR95860
  • KEGG Reaction : R01920
  • BioCyc : META:SPERMIDINESYN-RXN




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