Difference between revisions of "SELCYSS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SELCYSS SELCYSS] == * direction: ** LEFT-TO-RIGHT * common name: ** Selenocysteine synthase * Synon...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SELCYSS SELCYSS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ribonucleoside-diphosphate reductase (CDP)
+
** Selenocysteine synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[cdp]][c] '''+''' 1.0 [[trdrd]][c] '''=>''' 1.0 [[dcdp]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[trdox]][c]
+
** 1.0 [[sertrna_sec]][c] '''+''' 1.0 [[selnp]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[sectrna]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 CDP C9H12N3O11P2[c] '''+''' 1.0 Reduced thioredoxin[c] '''=>''' 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Oxidized thioredoxin[c]
+
** 1.0 L-Seryl-tRNA(Sec)[c] '''+''' 1.0 Selenophosphate[c] '''=>''' 1.0 H+[c] '''+''' 1.0 L-Selenocysteinyl-tRNA(Sec)[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0471]]
+
* Gene: [[EF0838]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* Gene: [[EF2976]]
−
* [[EF0472]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF0470]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''6''' reactions found over '''35''' reactions in the full pathway
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
+
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
−
** '''82''' reactions found over '''244''' reactions in the full pathway
+
** '''23''' reactions found over '''49''' reactions in the full pathway
−
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
+
−
** '''10''' reactions found over '''39''' reactions in the full pathway
+
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
−
** '''97''' reactions found over '''298''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:CDPREDUCT-RXN
+
* MetaNetX (MNX) Equation : MNXR104314
−
* MetaNetX (MNX) Equation : MNXR104064
+
* KEGG Reaction : R08219
−
* KEGG Reaction : R02024
+
* EC Number : 2.9.1.1
−
* EC Number : 1.17.4.1
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ribonucleoside-diphosphate reductase (CDP)}}
+
{{#set: common name=Selenocysteine synthase}}
−
{{#set: gene associated=EF0471|EF0472|EF0470}}
+
{{#set: gene associated=EF0838|EF2976}}
−
{{#set: in pathway=map01100|map00240|map00480|map00230}}
+
{{#set: in pathway=map00450|map00970}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 16:44, 21 March 2018

Reaction SELCYSS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Selenocysteine synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Seryl-tRNA(Sec)[c] + 1.0 Selenophosphate[c] => 1.0 H+[c] + 1.0 L-Selenocysteinyl-tRNA(Sec)[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104314
  • KEGG Reaction : R08219
  • EC Number : 2.9.1.1




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