Difference between revisions of "SPMDOX"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACACT1r ACACT1r] == * direction: ** REVERSIBLE * common name: ** Acetyl-CoA C-acetyltransferase * S...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDOX SPMDOX] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine:(acceptor) oxidoreduct...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACACT1r ACACT1r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDOX SPMDOX] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Acetyl-CoA C-acetyltransferase
+
** Spermidine:(acceptor) oxidoreductase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2.0 [[accoa]][c] '''<=>''' 1.0 [[aacoa]][c] '''+''' 1.0 [[coa]][c]
+
** 1.0 [[o2]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[spmd]][c] '''=>''' 1.0 [[4abutn]][c] '''+''' 1.0 [[h2o2]][c] '''+''' 1.0 [[13dampp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2.0 Acetyl-CoA[c] '''<=>''' 1.0 Acetoacetyl-CoA[c] '''+''' 1.0 Coenzyme A[c]
+
** 1.0 O2 O2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Spermidine[c] '''=>''' 1.0 4-Aminobutanal[c] '''+''' 1.0 Hydrogen peroxide[c] '''+''' 1.0 1 3 Diaminopropane C3H12N2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1364]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 
−
** '''21''' reactions found over '''129''' reactions in the full pathway
 
−
* [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
 
−
** '''6''' reactions found over '''138''' reactions in the full pathway
 
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''45''' reactions found over '''220''' reactions in the full pathway
 
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
 
−
** '''9''' reactions found over '''155''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''104''' reactions found over '''715''' reactions in the full pathway
 
−
* [[map00650]]: [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650]
 
−
** '''14''' reactions found over '''156''' reactions in the full pathway
 
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
 
−
** '''36''' reactions found over '''182''' reactions in the full pathway
 
−
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
 
−
** '''14''' reactions found over '''157''' reactions in the full pathway
 
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 
−
** '''31''' reactions found over '''163''' reactions in the full pathway
 
−
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 
−
** '''14''' reactions found over '''67''' reactions in the full pathway
 
−
* [[map00362]]: [http://www.genome.jp/dbget-bin/www_bget?map00362 map00362]
 
−
** '''2''' reactions found over '''114''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00072]]: [http://www.genome.jp/dbget-bin/www_bget?map00072 map00072]
 
−
** '''2''' reactions found over '''37''' reactions in the full pathway
 
−
* [[map00071]]: [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071]
 
−
** '''3''' reactions found over '''167''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00640]]: [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640]
 
−
** '''15''' reactions found over '''143''' reactions in the full pathway
 
−
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
 
−
** '''7''' reactions found over '''163''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.3.1.9
+
* MetaNetX (MNX) Equation : MNXR104481
−
* BioCyc : META:ACETYL-COA-ACETYLTRANSFER-RXN
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* MetaNetX (MNX) Equation : MNXR95194
+
{{#set: common name=Spermidine:(acceptor) oxidoreductase}}
−
* RHEA:
+
{{#set: in pathway=}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21036 21036]
+
{{#set: reconstruction category=gap-filling}}
−
* Reactome : REACT_R-ATH-73916
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
* KEGG Reaction : R00238
+
{{#set: reconstruction tool=meneco}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: common name=Acetyl-CoA C-acetyltransferase}}
+
−
{{#set: gene associated=EF1364}}
+
−
{{#set: in pathway=map01100|map00630|map00310|map01200|map00280|map01120|map00650|map01212|map00720|map00620|map00900|map00362|map01110|map00072|map00071|map01130|map00640|map00380}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
+

Latest revision as of 16:44, 21 March 2018

Reaction SPMDOX

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Spermidine:(acceptor) oxidoreductase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 O2 O2[c] + 1.0 H2O H2O[c] + 1.0 Spermidine[c] => 1.0 4-Aminobutanal[c] + 1.0 Hydrogen peroxide[c] + 1.0 1 3 Diaminopropane C3H12N2[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104481




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