Difference between revisions of "HIBD manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1] == * direction: ** LEFT-TO-RIGHT * common name: ** Argininosuccinate synthase * Sy...")
 
(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/cmp cmp] == * common name: ** CMP C9H12N3O8P * Synonym(s): == Reaction(s) known to consume t...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1] ==
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== Metabolite [http://bigg.ucsd.edu/universal/metabolites/cmp cmp] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** Argininosuccinate synthase
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** CMP C9H12N3O8P
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[NTD4]]
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** 1.0 [[atp]][c] '''+''' 1.0 [[citr__L]][c] '''+''' 1.0 [[asp__L]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[amp]][c] '''+''' 1.0 [[argsuc]][c]
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* [[CMPDAi]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Citrulline[c] '''+''' 1.0 L-Aspartate[c] '''=>''' 1.0 Diphosphate[c] '''+''' 2.0 H+[c] '''+''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 N(omega)-(L-Arginino)succinate[c]
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* [[PGSA141]]
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* [[PGSA140]]
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== Genes associated with this reaction  ==
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* [[MECDPS]]
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== Pathways  ==
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* [[CRPT_25]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[PGSA180]]
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** '''508''' reactions found over '''2349''' reactions in the full pathway
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* [[TECA2S45]]
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* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
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* [[CDGPT_BS]]
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** '''12''' reactions found over '''65''' reactions in the full pathway
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* [[PGSA161]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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* [[CYTDK2]]
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** '''218''' reactions found over '''1054''' reactions in the full pathway
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* [[CYTDK1]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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* [[PGSA160]]
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** '''83''' reactions found over '''228''' reactions in the full pathway
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* [[PPNCL2]]
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* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
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* [[TECA1S45]]
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** '''27''' reactions found over '''93''' reactions in the full pathway
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* [[PGSA181]]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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* [[ITCY]]
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** '''156''' reactions found over '''694''' reactions in the full pathway
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* [[PGSA120]]
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== Reconstruction information  ==
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* [[NTPP4]]
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* [[gap-filling]]:
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* [[CGPT]]
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** [[meneco]]:
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* [[LIPO3S24_BS]]
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*** [[added for gapfilling]]
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== Reaction(s) of unknown directionality ==
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* [[CYTK1]]
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* [[PGSA_LPL]]
 
== External links  ==
 
== External links  ==
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* EC Number : 6.3.4.5
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{{#set: common name=CMP C9H12N3O8P}}
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* BioCyc : META:ARGSUCCINSYN-RXN
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{{#set: consumed by=NTD4|CMPDAi}}
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* MetaNetX (MNX) Equation : MNXR95949
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{{#set: produced by=PGSA141|PGSA140|MECDPS|CRPT_25|PGSA180|TECA2S45|CDGPT_BS|PGSA161|CYTDK2|CYTDK1|PGSA160|PPNCL2|TECA1S45|PGSA181|ITCY|PGSA120|NTPP4|CGPT|LIPO3S24_BS}}
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* RHEA:
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{{#set: consumed or produced by=CYTK1|PGSA_LPL}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
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* Reactome : REACT_R-BTA-70577
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* KEGG Reaction : R01954
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Argininosuccinate synthase}}
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{{#set: in pathway=map01100|map00220|map01110|map01230|map00250|map01130}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction source=added for gapfilling}}
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Revision as of 16:09, 10 January 2018

Metabolite cmp

  • common name:
    • CMP C9H12N3O8P
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

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