Difference between revisions of "GALKr"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MEPCT MEPCT] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-C-methyl-D-erythritol 4-phosphate...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA2 GPDDA2] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycerophosphodiester phosphodies...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MEPCT MEPCT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA2 GPDDA2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
+
** Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2me4p]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[ctp]][c] '''=>''' 1.0 [[4c2me]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[g3pe]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[glyc3p]][c] '''+''' 1.0 [[etha]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-C-methyl-D-erythritol 4-phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 CTP C9H12N3O14P3[c] '''=>''' 1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 Sn-Glycero-3-phosphoethanolamine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 H+[c] '''+''' 1.0 Glycerol 3-phosphate[c] '''+''' 1.0 Ethanolamine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2172]]
+
* [[EF2163]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* [[EF0779]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''19''' reactions found over '''134''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
+
−
** '''14''' reactions found over '''67''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[e_coli_sstr_k12_substr_mg1655]]
 
*** [[e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** [[l_plantarum_wcfs1]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13429 13429]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29319 29319]
−
* BioCyc : META:2.7.7.60-RXN
+
* BioCyc : META:RXN-14160
−
* MetaNetX (MNX) Equation : MNXR96807
+
* MetaNetX (MNX) Equation : MNXR100411
−
* KEGG Reaction : R05633
+
* KEGG Reaction : R01470
−
* EC Number : 2.7.7.60
+
* EC Number : 3.1.4.2
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase}}
+
{{#set: common name=Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)}}
−
{{#set: gene associated=EF2172}}
+
{{#set: gene associated=EF2163|EF0779}}
−
{{#set: in pathway=map01100|map01130|map01110|map00900}}
+
{{#set: in pathway=map00564}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}

Revision as of 17:17, 10 January 2018

Reaction GPDDA2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Sn-Glycero-3-phosphoethanolamine[c] + 1.0 H2O H2O[c] => 1.0 H+[c] + 1.0 Glycerol 3-phosphate[c] + 1.0 Ethanolamine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-14160
  • MetaNetX (MNX) Equation : MNXR100411
  • KEGG Reaction : R01470
  • EC Number : 3.1.4.2




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