Difference between revisions of "CAT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DBTS DBTS] == * direction: ** LEFT-TO-RIGHT * common name: ** Dethiobiotin synthase * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DPMVD DPMVD] == * direction: ** LEFT-TO-RIGHT * common name: ** Diphosphomevalonate decarboxylase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/DBTS DBTS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DPMVD DPMVD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Dethiobiotin synthase
+
** Diphosphomevalonate decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[dann]][c] '''=>''' 3.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[dtbt]][c] '''+''' 1.0 [[pi]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[5dpmev]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[ipdp]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 7,8-Diaminononanoate[c] '''=>''' 3.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Dethiobiotin[c] '''+''' 1.0 Phosphate[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 R  5 Diphosphomevalonate C6H10O10P2[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Isopentenyl diphosphate[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF0903]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''30''' reactions found over '''67''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 +
** '''14''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* [[orthology]]:
−
** [[meneco]]:
+
** [[pantograph]]:
−
*** [[added for gapfilling]]
+
*** [[l_plantarum_wcfs1]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23732 23732]
−
* EC Number : 6.3.3.3
+
* BioCyc : META:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
−
* MetaNetX (MNX) Equation : MNXR97180
+
* MetaNetX (MNX) Equation : MNXR97776
−
* KEGG Reaction : R03182
+
* KEGG Reaction : R01121
−
* BioCyc : META:DETHIOBIOTIN-SYN-RXN
+
* EC Number : 4.1.1.33
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Dethiobiotin synthase}}
+
{{#set: common name=Diphosphomevalonate decarboxylase}}
−
{{#set: in pathway=map01100|map00780}}
+
{{#set: gene associated=EF0903}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map01130|map01110|map00900}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=l_plantarum_wcfs1}}

Revision as of 16:18, 10 January 2018

Reaction DPMVD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Diphosphomevalonate decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 R 5 Diphosphomevalonate C6H10O10P2[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 Isopentenyl diphosphate[c] + 1.0 CO2 CO2[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
  • MetaNetX (MNX) Equation : MNXR97776
  • KEGG Reaction : R01121
  • EC Number : 4.1.1.33




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