Difference between revisions of "APH160"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] == * direction: ** REVERSIBLE * common name: ** Glycine hydroxymethyltransferase, re...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DRPA DRPA] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxyribose-phosphate aldolase * Syno...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DRPA DRPA] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycine hydroxymethyltransferase, reversible
+
** Deoxyribose-phosphate aldolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[thf]][c] '''+''' 1.0 [[ser__L]][c] '''<=>''' 1.0 [[gly]][c] '''+''' 1.0 [[mlthf]][c] '''+''' 1.0 [[h2o]][c]
+
** 1.0 [[2dr5p]][c] '''=>''' 1.0 [[acald]][c] '''+''' 1.0 [[g3p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 L-Serine[c] '''<=>''' 1.0 Glycine[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c] '''+''' 1.0 H2O H2O[c]
+
** 1.0 2-Deoxy-D-ribose 5-phosphate[c] '''=>''' 1.0 Acetaldehyde[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2550]]
+
* [[EF0174]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''26''' reactions found over '''69''' reactions in the full pathway
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
−
** '''25''' reactions found over '''129''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map00460]]: [http://www.genome.jp/dbget-bin/www_bget?map00460 map00460]
+
−
** '''2''' reactions found over '''14''' reactions in the full pathway
+
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
−
** '''50''' reactions found over '''220''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''83''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
+
−
** '''18''' reactions found over '''75''' reactions in the full pathway
+
−
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
+
−
** '''24''' reactions found over '''133''' reactions in the full pathway
+
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
−
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
+
−
** '''14''' reactions found over '''65''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
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*** [[b_subtilis_subsp_subtilis_str168]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 4.1.2.4
 +
* BioCyc : META:DEOXYRIBOSE-P-ALD-RXN
 +
* MetaNetX (MNX) Equation : MNXR97787
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12821 12821]
−
* MetaNetX (MNX) Equation : MNXR100142
+
* Reactome : REACT_R-BTA-6787321
−
* KEGG Reaction : R00945
+
* KEGG Reaction : R01066
−
* EC Number : 2.1.2.1
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=Deoxyribose-phosphate aldolase}}
−
{{#set: common name=Glycine hydroxymethyltransferase, reversible}}
+
{{#set: gene associated=EF0174}}
−
{{#set: gene associated=EF2550}}
+
{{#set: in pathway=map00030}}
−
{{#set: in pathway=map01100|map00630|map01110|map01120|map00460|map01200|map01230|map00680|map00260|map01130|map00670}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:19, 10 January 2018

Reaction DRPA

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Deoxyribose-phosphate aldolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-Deoxy-D-ribose 5-phosphate[c] => 1.0 Acetaldehyde[c] + 1.0 Glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 4.1.2.4
  • BioCyc : META:DEOXYRIBOSE-P-ALD-RXN
  • MetaNetX (MNX) Equation : MNXR97787
  • RHEA:
  • Reactome : REACT_R-BTA-6787321
  • KEGG Reaction : R01066




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