Difference between revisions of "Gap-filling"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071] == * common_name: ** Fatty acid degradation * Synonym(s): == Reaction(s) found ==...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Fatty acid degradation
−
* common name:
+
−
** Ribonucleoside-diphosphate reductase (CDP)
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''167''' reactions in the full pathway
−
** 1.0 [[trdrd]][c] '''+''' 1.0 [[cdp]][c] '''=>''' 1.0 [[dcdp]][c] '''+''' 1.0 [[trdox]][c] '''+''' 1.0 [[h2o]][c]
+
* [[ABUTD]]
−
* With common name(s):
+
* [[ACACT1r]]
−
** 1.0 Reduced thioredoxin[c] '''+''' 1.0 CDP C9H12N3O11P2[c] '''=>''' 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 Oxidized thioredoxin[c] '''+''' 1.0 H2O H2O[c]
+
* [[GLYALDDr]]
−
 
+
== Reaction(s) not found ==
−
== Genes associated with this reaction  ==
+
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
−
* [[EF0472]]
+
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
−
* [[EF0470]]
+
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS1 AACPS1]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS1_1 AACPS1_1]
−
* [[EF0471]]
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS2 AACPS2]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS3 AACPS3]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS3_1 AACPS3_1]
−
== Pathways  ==
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS6 AACPS6]
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS6_1 AACPS6_1]
−
** '''83''' reactions found over '''244''' reactions in the full pathway
+
* [http://bigg.ucsd.edu/universal/reactions/AACPS8 AACPS8]
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
−
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
−
** '''11''' reactions found over '''39''' reactions in the full pathway
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
−
** '''98''' reactions found over '''298''' reactions in the full pathway
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
−
== Reconstruction information  ==
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
−
* [[orthology]]:
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
−
** [[pantograph]]:
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
−
*** [[l_plantarum_wcfs1]]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA100OR ACOA100OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA120OR ACOA120OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA140OR ACOA140OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA160OR ACOA160OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA40OR ACOA40OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA60OR ACOA60OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA80OR ACOA80OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1f ACOAD1f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1fm ACOAD1fm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD2f ACOAD2f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD3f ACOAD3f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD4f ACOAD4f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD5f ACOAD5f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD6f ACOAD6f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD7f ACOAD7f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/C160CPT1 C160CPT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/C160CPT2 C160CPT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/C160CPT2rbc C160CPT2rbc]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTECOAI6 CTECOAI6]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTECOAI7 CTECOAI7]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTECOAI8 CTECOAI8]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH2 ECOAH2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH2_1 ECOAH2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH2m ECOAH2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH3 ECOAH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH3_1 ECOAH3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH3m ECOAH3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH4 ECOAH4]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH4m ECOAH4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH4p ECOAH4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5 ECOAH5]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5_1 ECOAH5_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5m ECOAH5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5p ECOAH5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH6 ECOAH6]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH6m ECOAH6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH6p ECOAH6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH7 ECOAH7]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH7m ECOAH7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH7p ECOAH7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL100p FACOAL100p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL120p FACOAL120p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL141 FACOAL141]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL141p FACOAL141p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL160 FACOAL160]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL160p FACOAL160p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL180 FACOAL180]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL80p FACOAL80p]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLCOAS GLCOAS]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTCOADHc GLUTCOADHc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTCOADHm GLUTCOADHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1 HACD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LIDOMO LIDOMO]
 +
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/P4503A43r P4503A43r]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/RAHY RAHY]
 +
* [http://bigg.ucsd.edu/universal/reactions/RNADRr RNADRr]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:CDPREDUCT-RXN
+
{{#set: common_name=Fatty acid degradation}}
−
* MetaNetX (MNX) Equation : MNXR104064
+
{{#set: reaction found=3}}
−
* KEGG Reaction : R02024
+
{{#set: reaction not found=167}}
−
* EC Number : 1.17.4.1
+
{{#set: completion rate=2.0}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Ribonucleoside-diphosphate reductase (CDP)}}
+
−
{{#set: gene associated=EF0472|EF0470|EF0471}}
+
−
{{#set: in pathway=map00240|map01100|map00480|map00230}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 13:11, 31 January 2018

Pathway map00071

  • common_name:
    • Fatty acid degradation
  • Synonym(s):

Reaction(s) found

3 reactions found over 167 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=Gap-filling&oldid=5662"