Difference between revisions of "IPPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr] == * direction: ** REVERSIBLE * common name: ** D-Glyceraldehyde dehydrogenase *...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] == * common_name: ** Butanoate metabolism * Synonym(s): == Reaction(s) found == '...")
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[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] ==
−
* direction:
+
* common_name:
−
** REVERSIBLE
+
** Butanoate metabolism
−
* common name:
+
−
** D-Glyceraldehyde dehydrogenase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''14''' reactions found over '''156''' reactions in the full pathway
−
** 1.0 [[glyald]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''<=>''' 1.0 [[glyc__R]][c] '''+''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c]
+
* [[ACACT1r]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 D-Glyceraldehyde[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''<=>''' 1.0 (R)-Glycerate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c]
+
*** [[EF1364]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[EF0253]]
+
* [[ACALD]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** 1 associated gene(s):
−
== Pathways  ==
+
*** [[EF0900]]
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
** 2 reconstruction source(s) associated:
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
+
*** [[orthology-l_plantarum_wcfs1]]
−
** '''6''' reactions found over '''138''' reactions in the full pathway
+
* [[ACHBS]]
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
** 1 associated gene(s):
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
*** [[EF1213]]
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
+
** 2 reconstruction source(s) associated:
−
** '''9''' reactions found over '''155''' reactions in the full pathway
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
*** [[orthology-l_plantarum_wcfs1]]
−
** '''104''' reactions found over '''715''' reactions in the full pathway
+
* [[ACLDC]]
−
* [[map00981]]: [http://www.genome.jp/dbget-bin/www_bget?map00981 map00981]
+
** 1 associated gene(s):
−
** '''2''' reactions found over '''18''' reactions in the full pathway
+
*** [[EF1214]]
−
* [[map00903]]: [http://www.genome.jp/dbget-bin/www_bget?map00903 map00903]
+
** 2 reconstruction source(s) associated:
−
** '''2''' reactions found over '''30''' reactions in the full pathway
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
+
*** [[orthology-l_plantarum_wcfs1]]
−
** '''6''' reactions found over '''90''' reactions in the full pathway
+
* [[ACLS]]
−
* [[map00625]]: [http://www.genome.jp/dbget-bin/www_bget?map00625 map00625]
+
** 1 associated gene(s):
−
** '''3''' reactions found over '''25''' reactions in the full pathway
+
*** [[EF1213]]
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
+
** 2 reconstruction source(s) associated:
−
** '''22''' reactions found over '''149''' reactions in the full pathway
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
+
*** [[orthology-l_plantarum_wcfs1]]
−
** '''31''' reactions found over '''163''' reactions in the full pathway
+
* [[ASP1DC]]
−
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
+
** 1 associated gene(s):
−
** '''7''' reactions found over '''163''' reactions in the full pathway
+
*** [[EF1858]]
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
+
** 3 reconstruction source(s) associated:
−
** '''24''' reactions found over '''149''' reactions in the full pathway
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** '''7''' reactions found over '''50''' reactions in the full pathway
+
*** [[orthology-l_plantarum_wcfs1]]
−
* [[map00071]]: [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071]
+
* [[BUTKr]]
−
** '''3''' reactions found over '''167''' reactions in the full pathway
+
** 1 associated gene(s):
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
*** [[EF1662]]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[map00561]]: [http://www.genome.jp/dbget-bin/www_bget?map00561 map00561]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** '''7''' reactions found over '''83''' reactions in the full pathway
+
* [[GLUDC]]
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
+
** 0 associated gene:
−
** '''8''' reactions found over '''91''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
== Reconstruction information  ==
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
* [[orthology]]:
+
* [[HMGCOAS]]
−
** [[pantograph]]:
+
** 1 associated gene(s):
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** [[EF1363]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[OBTFL]]
 +
** 2 associated gene(s):
 +
*** [[EF1612]]
 +
*** [[EF1613]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[PBUTT]]
 +
** 2 associated gene(s):
 +
*** [[EF1663]]
 +
*** [[EF0949]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[PFL]]
 +
** 2 associated gene(s):
 +
*** [[EF1612]]
 +
*** [[EF1613]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[SSALx]]
 +
** 1 associated gene(s):
 +
*** [[EF0253]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[SSALy]]
 +
** 1 associated gene(s):
 +
*** [[EF0253]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACOAT AACOAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABTA ABTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABTArm ABTArm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACCT ACACCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACAS_2ahbut ACAS_2ahbut]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA40OR ACOA40OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1 ACOAD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1f ACOAD1f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1fm ACOAD1fm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD2 ACOAD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACTD ACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/APLh APLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/APLm APLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGDh ARGDh]
 +
* [http://bigg.ucsd.edu/universal/reactions/BDH BDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/BDHm BDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BNORh BNORh]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTCOARx BTCOARx]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTDD_RR BTDD_RR]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTS BTS]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTS_nadph BTS_nadph]
 +
* [http://bigg.ucsd.edu/universal/reactions/BUTCT BUTCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL40im FACOAL40im]
 +
* [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
 +
* [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHBDHx GHBDHx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1 HACD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBNOx HBNOx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGL HMGL]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGL_1 HMGL_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGLm HMGLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGLx HMGLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/HXCT HXCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALDDH MALDDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALEI MALEI]
 +
* [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCOAT1 OCOAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCOAT1m OCOAT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSALxm SSALxm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSNOh SSNOh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/VACOAI VACOAI]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Butanoate metabolism}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30783 30783]
+
{{#set: reaction found=14}}
−
* Reactome : REACT_R-ATH-6813749
+
{{#set: total reaction=156}}
−
* MetaNetX (MNX) Equation : MNXR100310
+
{{#set: completion rate=9.0}}
−
* KEGG Reaction : R01752
+
−
* EC Number : 1.2.1.3
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=D-Glyceraldehyde dehydrogenase}}
+
−
{{#set: gene associated=EF0253}}
+
−
{{#set: in pathway=map01100|map00310|map01110|map00280|map01120|map00981|map00903|map00340|map00625|map00330|map00620|map00380|map00010|map00053|map00071|map01130|map00561|map00410}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
+

Revision as of 18:53, 18 March 2018

Pathway map00650

  • common_name:
    • Butanoate metabolism
  • Synonym(s):

Reaction(s) found

14 reactions found over 156 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=IPPS&oldid=5748"