Difference between revisions of "GRTT"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DADNK DADNK] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxyadenosine kinase * Synonym(s):...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290] == * common_name: ** Valine, leucine and isoleucine biosynthesis * Synonym(s): ==...")
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/DADNK DADNK] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290] ==
* direction:
+
* common_name:
** LEFT-TO-RIGHT
+
** Valine, leucine and isoleucine biosynthesis
* common name:
+
** Deoxyadenosine kinase
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''9''' reactions found over '''49''' reactions in the full pathway
** 1.0 [[dad_2]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[damp]][c]
+
* [[ACHBS]]
* With common name(s):
+
** 1 associated gene(s):
** 1.0 Deoxyadenosine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 DAMP C10H12N5O6P[c]
+
*** [[EF1213]]
 
+
** 2 reconstruction source(s) associated:
== Genes associated with this reaction  ==
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-l_plantarum_wcfs1]]
* [[EF0740]]
+
* [[ACLS]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** 1 associated gene(s):
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
*** [[EF1213]]
== Pathways  ==
+
** 2 reconstruction source(s) associated:
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
*** [[orthology-l_plantarum_wcfs1]]
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
* [[ILETA]]
** '''97''' reactions found over '''298''' reactions in the full pathway
+
** 1 associated gene(s):
== Reconstruction information  ==
+
*** [[EF1793]]
* [[orthology]]:
+
** 3 reconstruction source(s) associated:
** [[pantograph]]:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[l_plantarum_wcfs1]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[IPPS]]
 +
** 1 associated gene(s):
 +
*** [[EF3317]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[LEUTA]]
 +
** 1 associated gene(s):
 +
*** [[EF1793]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[LEUTAi]]
 +
** 1 associated gene(s):
 +
*** [[EF1793]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[SERD_L]]
 +
** 4 associated gene(s):
 +
*** [[EF0099]]
 +
*** [[EF2722]]
 +
*** [[EF0098]]
 +
*** [[EF2721]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[THRD_L]]
 +
** 1 associated gene(s):
 +
*** [[EF2421]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[VALTA]]
 +
** 1 associated gene(s):
 +
*** [[EF1793]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/ACAS_2ahbut ACAS_2ahbut]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/APLh APLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/APLm APLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTA_glu_h BCTA_glu_h]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTA_val_h BCTA_val_h]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/CITCIb CITCIb]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHAD1 DHAD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHAD1m DHAD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHAD2 DHAD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHAD2m DHAD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHAD_3mob_h DHAD_3mob_h]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHADh DHADh]
 +
* [http://bigg.ucsd.edu/universal/reactions/DMORh DMORh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPMD IPMD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPPMIa IPPMIa]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPPMIb IPPMIb]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
 +
* [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARA1 KARA1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARA1im KARA1im]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARA2 KARA2]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARA2im KARA2im]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARI KARI]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmb KARI_23dhmb]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmp KARI_23dhmp]
 +
* [http://bigg.ucsd.edu/universal/reactions/KARI_3hmoa KARI_3hmoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/LEUTAm LEUTAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OMCDC OMCDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/OMCDCm OMCDCm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SER_AL SER_AL]
 +
* [http://bigg.ucsd.edu/universal/reactions/TAL TAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRAL THRAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRD_Lm THRD_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/VALTAim VALTAim]
 +
* [http://bigg.ucsd.edu/universal/reactions/VPAMTr VPAMTr]
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: common_name=Valine, leucine and isoleucine biosynthesis}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23452 23452]
+
{{#set: reaction found=9}}
* BioCyc : META:DEOXYADENOSINE-KINASE-RXN
+
{{#set: total reaction=49}}
* MetaNetX (MNX) Equation : MNXR97079
+
{{#set: completion rate=18.0}}
* KEGG Reaction : R02089
+
* EC Number : 2.7.1.145
+
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=Deoxyadenosine kinase}}
+
{{#set: gene associated=EF0740}}
+
{{#set: in pathway=map01100|map00230}}
+
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 19:28, 18 March 2018

Pathway map00290

  • common_name:
    • Valine, leucine and isoleucine biosynthesis
  • Synonym(s):

Reaction(s) found

9 reactions found over 49 reactions in the full pathway

Reaction(s) not found

External links