Difference between revisions of "ExchangeSeed ade"

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(Created page with "Category:Gene == Gene EF0900 == * Synonym(s): == Reactions associated == * ACALD ** pantograph-l_plantarum_wcfs1 ** pantograph-e_coli_sstr_k12_substr_mg...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] == * common_name: ** Glycine, serine and threonine metabolism * Synonym(s): == Rea...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Pathway]]
−
== Gene EF0900 ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] ==
 +
* common_name:
 +
** Glycine, serine and threonine metabolism
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction(s) found ==
−
* [[ACALD]]
+
'''23''' reactions found over '''133''' reactions in the full pathway
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
* [[AGTi]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** 0 associated gene:
−
* [[ALCD2x]]
+
** 1 reconstruction source(s) associated:
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[APPLDHr]]
−
* [[CHOLD2]]
+
** 1 associated gene(s):
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
*** [[EF1358]]
−
== Pathways associated ==
+
** 1 reconstruction source(s) associated:
−
* [[map01100]]
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[map01220]]
+
* [[ASAD]]
−
* [[map00010]]
+
** 1 associated gene(s):
−
* [[map01110]]
+
*** [[EF1183]]
−
* [[map01120]]
+
** 2 reconstruction source(s) associated:
−
* [[map00650]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[map00622]]
+
*** [[orthology-l_plantarum_wcfs1]]
−
* [[map00620]]
+
* [[ASPK]]
−
* [[map00621]]
+
** 1 associated gene(s):
−
* [[map00362]]
+
*** [[EF0368]]
−
* [[map00360]]
+
** 3 reconstruction source(s) associated:
−
* [[map01130]]
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[ATHRDHr]]
 +
** 1 associated gene(s):
 +
*** [[EF2956]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[FOMETRi]]
 +
** 1 associated gene(s):
 +
*** [[EF2791]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[GACMTRc]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[GHMT2r]]
 +
** 1 associated gene(s):
 +
*** [[EF2550]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[GLYAMDTRc]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[GLYCK]]
 +
** 1 associated gene(s):
 +
*** [[EF2646]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[GLYCK2]]
 +
** 1 associated gene(s):
 +
*** [[EF2646]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[GLYTA]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[HPYRRx]]
 +
** 1 associated gene(s):
 +
*** [[EF3141]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[HPYRRy]]
 +
** 1 associated gene(s):
 +
*** [[EF3141]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[HSDy]]
 +
** 2 associated gene(s):
 +
*** [[EF0368]]
 +
*** [[EF2422]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[HSK]]
 +
** 1 associated gene(s):
 +
*** [[EF2420]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PGCD]]
 +
** 2 associated gene(s):
 +
*** [[EF2901]]
 +
*** [[EF3141]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[PGM]]
 +
** 2 associated gene(s):
 +
*** [[EF2664]]
 +
*** [[EF0195]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[SERD_D]]
 +
** 1 associated gene(s):
 +
*** [[EF2579]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[SERD_L]]
 +
** 4 associated gene(s):
 +
*** [[EF0099]]
 +
*** [[EF2722]]
 +
*** [[EF0098]]
 +
*** [[EF2721]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[THFAT]]
 +
** 1 associated gene(s):
 +
*** [[EF2550]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[THRD_L]]
 +
** 1 associated gene(s):
 +
*** [[EF2421]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[THRS]]
 +
** 1 associated gene(s):
 +
*** [[EF2421]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
 +
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
 +
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/4HTHRS 4HTHRS]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALASm ALASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDs AOBUTDs]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDsm AOBUTDsm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDxs AOBUTDxs]
 +
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/BETALDHx BETALDHx]
 +
* [http://bigg.ucsd.edu/universal/reactions/BETALDHxm BETALDHxm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BETALDHy BETALDHy]
 +
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLD2m CHOLD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS]
 +
* [http://bigg.ucsd.edu/universal/reactions/DABAAT DABAAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/DALAOX DALAOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
 +
* [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PL G3PL]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2 GCC2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2am GCC2am]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2bim GCC2bim]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCa GCCa]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCam GCCam]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCb GCCb]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCbim GCCbim]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYAT GLYAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYATm GLYATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYATx GLYATx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCL GLYCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCL_2 GLYCL_2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLm GLYCLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYDHD GLYDHD]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GNMT GNMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSK_1 HSK_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTAM MTAM]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTAM_nh4 MTAM_nh4]
 +
* [http://bigg.ucsd.edu/universal/reactions/OHPBAT OHPBAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLYDH PGLYDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGMf PGMf]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGMm PGMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSAT PSAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSERT PSERT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP PSP]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP_D PSP_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP_L PSP_L]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP_Lpp PSP_Lpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA120 PSSA120]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA160 PSSA160]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA161 PSSA161]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA180 PSSA180]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA181 PSSA181]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA_HP PSSA_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/R01465m R01465m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SARCOX SARCOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/SARCOXp SARCOXp]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERH SERH]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SER_AL SER_AL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPTc SPTc]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPTix SPTix]
 +
* [http://bigg.ucsd.edu/universal/reactions/TAL TAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/THFATm THFATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRA THRA]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRAL THRAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRA_1 THRA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRD THRD]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRD_Lm THRD_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRS_1 THRS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS1 TRPS1]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS2 TRPS2]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS2h TRPS2h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS3 TRPS3]
 
== External links  ==
 
== External links  ==
−
{{#set: reaction associated=ACALD|ALCD2x|CHOLD2}}
+
{{#set: common_name=Glycine, serine and threonine metabolism}}
−
{{#set: pathway associated=map01100|map01220|map00010|map01110|map01120|map00650|map00622|map00620|map00621|map00362|map00360|map01130}}
+
{{#set: reaction found=23}}
 +
{{#set: total reaction=133}}
 +
{{#set: completion rate=17.0}}

Revision as of 18:28, 18 March 2018

Pathway map00260

  • common_name:
    • Glycine, serine and threonine metabolism
  • Synonym(s):

Reaction(s) found

23 reactions found over 133 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=ExchangeSeed_ade&oldid=7345"