Difference between revisions of "Cd2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/URIK2 URIK2] == * direction: ** LEFT-TO-RIGHT * common name: ** Uridine kinase (GTP:Uridine) * Syno...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00332 map00332] == * common_name: ** Carbapenem biosynthesis * Synonym(s): == Reaction(s) found ==...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/URIK2 URIK2] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00332 map00332] ==
* direction:
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* common_name:
** LEFT-TO-RIGHT
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** Carbapenem biosynthesis
* common name:
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** Uridine kinase (GTP:Uridine)
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''2''' reactions found over '''14''' reactions in the full pathway
** 1.0 [[gtp]][c] '''+''' 1.0 [[uri]][c] '''=>''' 1.0 [[gdp]][c] '''+''' 1.0 [[ump]][c] '''+''' 1.0 [[h]][c]
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* [[G5SD]]
* With common name(s):
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** 1 associated gene(s):
** 1.0 GTP C10H12N5O14P3[c] '''+''' 1.0 Uridine[c] '''=>''' 1.0 GDP C10H12N5O11P2[c] '''+''' 1.0 UMP C9H11N2O9P[c] '''+''' 1.0 H+[c]
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*** [[EF0037]]
 
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** 3 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
* [[EF0825]]
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*** [[orthology-l_plantarum_wcfs1]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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* [[GLU5K]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** 1 associated gene(s):
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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*** [[EF0038]]
== Pathways  ==
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** 3 reconstruction source(s) associated:
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
** '''460''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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*** [[orthology-l_plantarum_wcfs1]]
** '''82''' reactions found over '''244''' reactions in the full pathway
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== Reaction(s) not found ==
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
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* [http://bigg.ucsd.edu/universal/reactions/ACPS ACPS]
** '''22''' reactions found over '''72''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/ACPSm ACPSm]
== Reconstruction information  ==
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* [http://bigg.ucsd.edu/universal/reactions/COAHLp COAHLp]
* [[orthology]]:
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* [http://bigg.ucsd.edu/universal/reactions/G5DHx G5DHx]
** [[pantograph]]:
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* [http://bigg.ucsd.edu/universal/reactions/G5SADrm G5SADrm]
*** [[e_coli_sstr_k12_substr_mg1655]]
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* [http://bigg.ucsd.edu/universal/reactions/G5SADs G5SADs]
*** [[l_plantarum_wcfs1]]
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* [http://bigg.ucsd.edu/universal/reactions/G5SD2 G5SD2]
*** [[b_subtilis_subsp_subtilis_str168]]
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* [http://bigg.ucsd.edu/universal/reactions/G5SDym G5SDym]
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* [http://bigg.ucsd.edu/universal/reactions/GLU5Km GLU5Km]
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* [http://bigg.ucsd.edu/universal/reactions/PAN4PP PAN4PP]
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* [http://bigg.ucsd.edu/universal/reactions/PROD2 PROD2]
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* [http://bigg.ucsd.edu/universal/reactions/PROD2m PROD2m]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: common_name=Carbapenem biosynthesis}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27650 27650]
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{{#set: reaction found=2}}
* BioCyc : META:URKI-RXN
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{{#set: total reaction=14}}
* MetaNetX (MNX) Equation : MNXR105163
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{{#set: completion rate=14.0}}
* KEGG Reaction : R00968
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* EC Number : 2.7.1.48
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Uridine kinase (GTP:Uridine)}}
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{{#set: gene associated=EF0825}}
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{{#set: in pathway=map01100|map00240|map00983}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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Revision as of 19:28, 18 March 2018

Pathway map00332

  • common_name:
    • Carbapenem biosynthesis
  • Synonym(s):

Reaction(s) found

2 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links