Difference between revisions of "TransportSeed asp L"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NIabc NIabc] == * direction: ** LEFT-TO-RIGHT * common name: ** Nickel transport via ABC system * S...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DTMPK DTMPK] == * direction: ** REVERSIBLE * common name: ** DTMP kinase * Synonym(s): == Reaction...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/NIabc NIabc] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DTMPK DTMPK] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Nickel transport via ABC system
+
** DTMP kinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[ni2]][e] '''=>''' 1.0 [[ni2]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[dtmp]][c] '''<=>''' 1.0 [[dtdp]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Nickel[e] '''=>''' 1.0 Nickel[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DTMP C10H13N2O8P[c] '''<=>''' 1.0 DTDP C10H13N2O11P2[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1352]]
+
* [[EF2764]]
−
** MANUAL
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[this was a reaction occurring in the perisplasm of e. coli]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15557#1 15557#1]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
−
* MetaNetX (MNX) Equation : MNXR101959
+
* BioCyc : META:DTMPKI-RXN
−
* EC Number : 3.6.3.24
+
* MetaNetX (MNX) Equation : MNXR97804
−
* BioCyc : META:3.6.3.24-RXN
+
* KEGG Reaction : R02094
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* EC Number : 2.7.4.12
−
{{#set: common name=Nickel transport via ABC system}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=EF1352}}
+
{{#set: common name=DTMP kinase}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=EF2764}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map00240}}
−
{{#set: reconstruction source=this was a reaction occurring in the perisplasm of e. coli}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:35, 18 March 2018

Reaction DTMPK

  • direction:
    • REVERSIBLE
  • common name:
    • DTMP kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 DTMP C10H13N2O8P[c] <=> 1.0 DTDP C10H13N2O11P2[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DTMPKI-RXN
  • MetaNetX (MNX) Equation : MNXR97804
  • KEGG Reaction : R02094
  • EC Number : 2.7.4.12




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