Difference between revisions of "TransportSeed xan"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK8 NDPK8] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dAD...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FCLT_2 FCLT_2] == * direction: ** LEFT-TO-RIGHT * common name: ** Heme B synthesis reaction * Synon...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK8 NDPK8] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/FCLT_2 FCLT_2] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Nucleoside-diphosphate kinase (ATP:dADP)
+
** Heme B synthesis reaction
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[dadp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[datp]][c]
+
** 1.0 [[ppp9]][c] '''+''' 1.0 [[fe2]][c] '''=>''' 1.0 [[pheme]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 DADP C10H12N5O9P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DATP C10H12N5O12P3[c]
+
** 1.0 Protoporphyrin[c] '''+''' 1.0 Fe2+ mitochondria[c] '''=>''' 1.0 Protoheme C34H30FeN4O4[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1036]]
+
* [[EF1989]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
−
* [[EF0228]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''82''' reactions found over '''244''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
−
* BioCyc : META:DADPKIN-RXN
+
* BioCyc : META:PROTOHEMEFERROCHELAT-RXN
−
* MetaNetX (MNX) Equation : MNXR101940
+
* MetaNetX (MNX) Equation : MNXR99471
−
* KEGG Reaction : R01137
+
* KEGG Reaction : R00310
−
* EC Number : 2.7.4.6
+
* EC Number : 4.99.1.1
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dADP)}}
+
{{#set: common name=Heme B synthesis reaction}}
−
{{#set: gene associated=EF1036|EF0228}}
+
{{#set: gene associated=EF1989}}
−
{{#set: in pathway=map01100|map01130|map01110|map00240|map00230}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 19:36, 18 March 2018

Reaction FCLT_2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Heme B synthesis reaction
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Protoporphyrin[c] + 1.0 Fe2+ mitochondria[c] => 1.0 Protoheme C34H30FeN4O4[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:PROTOHEMEFERROCHELAT-RXN
  • MetaNetX (MNX) Equation : MNXR99471
  • KEGG Reaction : R00310
  • EC Number : 4.99.1.1




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