Difference between revisions of "Cddec5eACP"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/METAT METAT] == * direction: ** LEFT-TO-RIGHT * common name: ** Methionine adenosyltransferase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYDHDA GLYDHDA] == * direction: ** REVERSIBLE * common name: ** Gylcine dehydrogenase (deamidating...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/METAT METAT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYDHDA GLYDHDA] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Methionine adenosyltransferase
+
** Gylcine dehydrogenase (deamidating)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[met__L]][c] '''=>''' 1.0 [[amet]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[ppi]][c]
+
** 1.0 [[gly]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[glx]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Methionine[c] '''=>''' 1.0 S-Adenosyl-L-methionine[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 Diphosphate[c]
+
** 1.0 Glycine[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Ammonium[c] '''+''' 1.0 Glyoxylate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0784]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 
−
** '''25''' reactions found over '''135''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''56''' reactions found over '''228''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
−
*** [[l_plantarum_wcfs1]]
+
**** Comment: [[added for gapfilling]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
+
{{#set: common name=Gylcine dehydrogenase (deamidating)}}
−
* BioCyc : META:S-ADENMETSYN-RXN
+
{{#set: in pathway=}}
−
* MetaNetX (MNX) Equation : MNXR101407
+
{{#set: reconstruction category=gap-filling}}
−
* KEGG Reaction : R00177
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
* EC Number : 2.5.1.6
+
{{#set: reconstruction tool=meneco}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: common name=Methionine adenosyltransferase}}
+
−
{{#set: gene associated=EF0784}}
+
−
{{#set: in pathway=map01100|map00270|map01110|map01230}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 18:39, 18 March 2018

Reaction GLYDHDA

  • direction:
    • REVERSIBLE
  • common name:
    • Gylcine dehydrogenase (deamidating)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Glycine[c] + 1.0 H2O H2O[c] + 1.0 Nicotinamide adenine dinucleotide[c] <=> 1.0 Ammonium[c] + 1.0 Glyoxylate[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

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