Difference between revisions of "Cdp"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TREpts TREpts] == * direction: ** LEFT-TO-RIGHT * common name: ** Trehalose transport via PEP:Pyr P...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR2 RNDR2] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...") |
||
| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR2 RNDR2] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** Ribonucleoside-diphosphate reductase (GDP) |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[trdrd]][c] '''+''' 1.0 [[gdp]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[dgdp]][c] '''+''' 1.0 [[trdox]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 Reduced thioredoxin[c] '''+''' 1.0 GDP C10H12N5O11P2[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 DGDP C10H12N5O10P2[c] '''+''' 1.0 Oxidized thioredoxin[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * [[EF0472]] |
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ||
| − | * [[ | + | * [[EF0470]] |
| + | ** [[pantograph]]-[[l_plantarum_wcfs1]] | ||
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ||
| − | * [[ | + | * [[EF0471]] |
| + | ** [[pantograph]]-[[l_plantarum_wcfs1]] | ||
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240] | ||
| + | ** '''82''' reactions found over '''244''' reactions in the full pathway | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480] | ||
| + | ** '''10''' reactions found over '''39''' reactions in the full pathway | ||
| + | * [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230] | ||
| + | ** '''97''' reactions found over '''298''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]]: | + | * Category: [[orthology]] |
| − | ** [[pantograph]]: | + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | * MetaNetX (MNX) Equation : | + | * BioCyc : META:GDPREDUCT-RXN |
| − | * EC Number : | + | * MetaNetX (MNX) Equation : MNXR104062 |
| + | * KEGG Reaction : R02019 | ||
| + | * EC Number : 1.17.4.1 | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: common name= | + | {{#set: common name=Ribonucleoside-diphosphate reductase (GDP)}} |
| − | {{#set: gene associated= | + | {{#set: gene associated=EF0472|EF0470|EF0471}} |
| − | {{#set: in pathway=}} | + | {{#set: in pathway=map00240|map01100|map00480|map00230}} |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
| − | |||
Revision as of 19:39, 18 March 2018
Contents
Reaction RNDR2
- direction:
- LEFT-TO-RIGHT
- common name:
- Ribonucleoside-diphosphate reductase (GDP)
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Reduced thioredoxin[c] + 1.0 GDP C10H12N5O11P2[c] => 1.0 H2O H2O[c] + 1.0 DGDP C10H12N5O10P2[c] + 1.0 Oxidized thioredoxin[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- map00240: map00240
- 82 reactions found over 244 reactions in the full pathway
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00480: map00480
- 10 reactions found over 39 reactions in the full pathway
- map00230: map00230
- 97 reactions found over 298 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-b_subtilis_subsp_subtilis_str168
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-b_subtilis_subsp_subtilis_str168
External links
- BioCyc : META:GDPREDUCT-RXN
- MetaNetX (MNX) Equation : MNXR104062
- KEGG Reaction : R02019
- EC Number : 1.17.4.1
