Difference between revisions of "Cbasp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/G5SD G5SD] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate-5-semialdehyde dehydrogenas...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTBD CYTBD] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytochrome oxidase bd (ubiquinol-8:...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/G5SD G5SD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTBD CYTBD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glutamate-5-semialdehyde dehydrogenase
+
** Cytochrome oxidase bd (ubiquinol-8: 2 protons)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[glu5p]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[nadp]][c] '''+''' 1.0 [[glu5sa]][c]
+
** 0.5 [[o2]][c] '''+''' 1.0 [[q8h2]][c] '''+''' 2.0 [[h]][c] '''=>''' 1.0 [[q8]][c] '''+''' 1.0 [[h2o]][c] '''+''' 2.0 [[h]][e]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 L-Glutamate 5-phosphate[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 L-Glutamate 5-semialdehyde[c]
+
** 0.5 O2 O2[c] '''+''' 1.0 Ubiquinol-8[c] '''+''' 2.0 H+[c] '''=>''' 1.0 Ubiquinone-8[c] '''+''' 1.0 H2O H2O[c] '''+''' 2.0 H+[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0037]]
+
* [[EF2061]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** 2_reaction_to_add_delete
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[EF2060]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** 2_reaction_to_add_delete
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 
−
** '''22''' reactions found over '''149''' reactions in the full pathway
 
−
* [[map00332]]: [http://www.genome.jp/dbget-bin/www_bget?map00332 map00332]
 
−
** '''2''' reactions found over '''14''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''56''' reactions found over '''228''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
+
** Source: [[manual-2_reaction_to_add_delete]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
−
*** [[l_plantarum_wcfs1]]
+
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR97031
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19541 19541]
+
−
* BioCyc : META:GLUTSEMIALDEHYDROG-RXN
+
−
* MetaNetX (MNX) Equation : MNXR99896
+
−
* KEGG Reaction : R03313
+
−
* EC Number : 1.2.1.41
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glutamate-5-semialdehyde dehydrogenase}}
+
{{#set: common name=Cytochrome oxidase bd (ubiquinol-8: 2 protons)}}
−
{{#set: gene associated=EF0037}}
+
{{#set: gene associated=EF2061|EF2060}}
−
{{#set: in pathway=map01100|map01110|map00330|map00332|map01230|map01130}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=manual-2_reaction_to_add_delete}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}

Revision as of 18:39, 18 March 2018

Reaction CYTBD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cytochrome oxidase bd (ubiquinol-8: 2 protons)
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 0.5 o2[c] + 1.0 q8h2[c] + 2.0 h[c] => 1.0 q8[c] + 1.0 h2o[c] + 2.0 h[e]
  • With common name(s):
    • 0.5 O2 O2[c] + 1.0 Ubiquinol-8[c] + 2.0 H+[c] => 1.0 Ubiquinone-8[c] + 1.0 H2O H2O[c] + 2.0 H+[e]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • EF2061
    • 2_reaction_to_add_delete
  • EF2060
    • 2_reaction_to_add_delete

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR97031




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