Difference between revisions of "12ppd R"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CHOLD2 CHOLD2] == * direction: ** LEFT-TO-RIGHT * common name: ** Choline dehydrogenase FAD depend...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCK GLYCK] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycerate kinase * Synonym(s): ==...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CHOLD2 CHOLD2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCK GLYCK] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Choline dehydrogenase  FAD dependent
+
** Glycerate kinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[chol]][c] '''+''' 1.0 [[fad]][c] '''=>''' 1.0 [[betald]][c] '''+''' 1.0 [[fadh2]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[glyc__R]][c] '''=>''' 1.0 [[3pg]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Choline C5H14NO[c] '''+''' 1.0 Flavin adenine dinucleotide oxidized[c] '''=>''' 1.0 Betaine aldehyde[c] '''+''' 1.0 Flavin adenine dinucleotide reduced[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 (R)-Glycerate[c] '''=>''' 1.0 3-Phospho-D-glycerate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1635]]
+
* [[EF2646]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
* [[EF0900]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF1624]]
+
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 +
** '''21''' reactions found over '''129''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00561]]: [http://www.genome.jp/dbget-bin/www_bget?map00561 map00561]
 +
** '''7''' reactions found over '''83''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''23''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* Reactome : REACT_R-ATH-6797961
+
* EC Number : 2.7.1.31
−
* MetaNetX (MNX) Equation : MNXR96698
+
* BioCyc : META:GLY3KIN-RXN
−
* EC Number : 1.1.99.1
+
* MetaNetX (MNX) Equation : MNXR100328
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23516 23516]
 +
* Reactome : REACT_R-BTA-6799495
 +
* KEGG Reaction : R01514
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Choline dehydrogenase  FAD dependent }}
+
{{#set: common name=Glycerate kinase}}
−
{{#set: gene associated=EF1635|EF0900|EF1624}}
+
{{#set: gene associated=EF2646}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map00630|map01110|map00561|map01200|map00260|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:42, 18 March 2018

Reaction GLYCK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycerate kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 (R)-Glycerate[c] => 1.0 3-Phospho-D-glycerate[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 2.7.1.31
  • BioCyc : META:GLY3KIN-RXN
  • MetaNetX (MNX) Equation : MNXR100328
  • RHEA:
  • Reactome : REACT_R-BTA-6799495
  • KEGG Reaction : R01514




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