Difference between revisions of "CYSTL"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALATA_D2 ALATA_D2] == * direction: ** LEFT-TO-RIGHT * common name: ** D-alanine transaminase * Syno...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RPI RPI] == * direction: ** REVERSIBLE * common name: ** Ribose-5-phosphate isomerase * Synonym(s):...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ALATA_D2 ALATA_D2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RPI RPI] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** D-alanine transaminase
+
** Ribose-5-phosphate isomerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pydx5p]][c] '''+''' 1.0 [[ala__D]][c] '''=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[pyam5p]][c]
+
** 1.0 [[r5p]][c] '''<=>''' 1.0 [[ru5p__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Pyridoxal 5'-phosphate[c] '''+''' 1.0 D-Alanine[c] '''=>''' 1.0 Pyruvate[c] '''+''' 1.0 Pyridoxamine 5'-phosphate[c]
+
** 1.0 Alpha-D-Ribose 5-phosphate[c] '''<=>''' 1.0 D-Ribulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2550]]
+
* [[EF0197]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF1835]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF1834]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
 +
** '''22''' reactions found over '''63''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR104084
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28562 28562]
+
* EC Number : 5.3.1.6
−
* MetaNetX (MNX) Equation : MNXR95697
+
{{#set: direction=REVERSIBLE}}
−
* KEGG Reaction : R01147
+
{{#set: common name=Ribose-5-phosphate isomerase}}
−
* BioCyc : META:RXN0-5240
+
{{#set: gene associated=EF0197|EF1835|EF1834}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: in pathway=map01100|map01110|map01120|map00051|map00710|map01130|map00030}}
−
{{#set: common name=D-alanine transaminase}}
+
−
{{#set: gene associated=EF2550}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Revision as of 18:44, 18 March 2018

Reaction RPI

  • direction:
    • REVERSIBLE
  • common name:
    • Ribose-5-phosphate isomerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Alpha-D-Ribose 5-phosphate[c] <=> 1.0 D-Ribulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104084
  • EC Number : 5.3.1.6




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