Difference between revisions of "OCMAT3 manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/XTSNH XTSNH] == * direction: ** LEFT-TO-RIGHT * common name: ** Xanthosine hydrolase * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FORt2 FORt2] == * direction: ** REVERSIBLE * common name: ** Formate transport in via proton sympor...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/XTSNH XTSNH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/FORt2 FORt2] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
** Xanthosine hydrolase
+
** Formate transport in via proton symport
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[xtsn]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[xan]][c] '''+''' 1.0 [[rib__D]][c]
+
** 1.0 [[for]][e] '''+''' 1.0 [[h]][e] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[for]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Xanthosine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Xanthine[c] '''+''' 1.0 D-Ribose[c]
+
** 1.0 Formate[e] '''+''' 1.0 H+[e] '''<=>''' 1.0 H+[c] '''+''' 1.0 Formate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2587]]
+
* [[EF0094]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
* [[EF1921]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
** '''97''' reactions found over '''298''' reactions in the full pathway
 
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
 
** '''19''' reactions found over '''97''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
*** [[l_plantarum_wcfs1]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR99621
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27994 27994]
+
{{#set: direction=REVERSIBLE}}
* BioCyc : META:RXN0-363
+
{{#set: common name=Formate transport in via proton symport}}
* MetaNetX (MNX) Equation : MNXR105245
+
{{#set: gene associated=EF0094}}
* KEGG Reaction : R02143
+
{{#set: in pathway=}}
* EC Number : 3.2.2.1
+
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=Xanthosine hydrolase}}
+
{{#set: gene associated=EF2587|EF1921}}
+
{{#set: in pathway=map01100|map00230|map00760}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
 

Revision as of 18:45, 18 March 2018

Reaction FORt2

  • direction:
    • REVERSIBLE
  • common name:
    • Formate transport in via proton symport
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 for[e] + 1.0 h[e] <=> 1.0 h[c] + 1.0 for[c]
  • With common name(s):
    • 1.0 Formate[e] + 1.0 H+[e] <=> 1.0 H+[c] + 1.0 Formate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR99621