Difference between revisions of "APG3PAT161"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine synthase * Synonym(s): ==...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/XTSNH XTSNH] == * direction: ** LEFT-TO-RIGHT * common name: ** Xanthosine hydrolase * Synonym(s):...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMS SPMS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/XTSNH XTSNH] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Spermidine synthase
+
** Xanthosine hydrolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ptrc]][c] '''+''' 1.0 [[ametam]][c] '''=>''' 1.0 [[spmd]][c] '''+''' 1.0 [[5mta]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[xtsn]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[xan]][c] '''+''' 1.0 [[rib__D]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Putrescine[c] '''+''' 1.0 S-Adenosylmethioninamine[c] '''=>''' 1.0 Spermidine[c] '''+''' 1.0 5-Methylthioadenosine[c] '''+''' 1.0 H+[c]
+
** 1.0 Xanthosine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Xanthine[c] '''+''' 1.0 D-Ribose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[EF2587]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
* [[EF1921]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''25''' reactions found over '''135''' reactions in the full pathway
+
** '''97''' reactions found over '''298''' reactions in the full pathway
−
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
+
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
−
** '''10''' reactions found over '''39''' reactions in the full pathway
+
** '''19''' reactions found over '''97''' reactions in the full pathway
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
+
−
** '''22''' reactions found over '''149''' reactions in the full pathway
+
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
+
−
** '''8''' reactions found over '''91''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27994 27994]
−
* EC Number : 2.5.1.16
+
* BioCyc : META:RXN0-363
−
* MetaNetX (MNX) Equation : MNXR95860
+
* MetaNetX (MNX) Equation : MNXR105245
−
* KEGG Reaction : R01920
+
* KEGG Reaction : R02143
−
* BioCyc : META:SPERMIDINESYN-RXN
+
* EC Number : 3.2.2.1
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Spermidine synthase}}
+
{{#set: common name=Xanthosine hydrolase}}
−
{{#set: in pathway=map01100|map00270|map00480|map00330|map00410}}
+
{{#set: gene associated=EF2587|EF1921}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map00230|map00760}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:45, 18 March 2018

Reaction XTSNH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Xanthosine hydrolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Xanthosine[c] + 1.0 H2O H2O[c] => 1.0 Xanthine[c] + 1.0 D-Ribose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN0-363
  • MetaNetX (MNX) Equation : MNXR105245
  • KEGG Reaction : R02143
  • EC Number : 3.2.2.1




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