Difference between revisions of "NTPP11"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] == * direction: ** REVERSIBLE * common name: ** Glycine hydroxymethyltransferase, re...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_pydxn TransportSeed_pydxn] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reactio...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_pydxn TransportSeed_pydxn] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
−
* common name:
+
−
** Glycine hydroxymethyltransferase, reversible
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ser__L]][c] '''+''' 1.0 [[thf]][c] '''<=>''' 1.0 [[mlthf]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[gly]][c]
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** 1.0 [[pydxn]][e] '''=>''' 1.0 [[pydxn]][c]
 
* With common name(s):
 
* With common name(s):
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** 1.0 L-Serine[c] '''+''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''<=>''' 1.0 5,10-Methylenetetrahydrofolate[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Glycine[c]
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** 1.0 Pyridoxine[e] '''=>''' 1.0 Pyridoxine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF2550]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 
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** '''21''' reactions found over '''129''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
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** '''104''' reactions found over '''715''' reactions in the full pathway
 
−
* [[map00460]]: [http://www.genome.jp/dbget-bin/www_bget?map00460 map00460]
 
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** '''1''' reactions found over '''14''' reactions in the full pathway
 
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''45''' reactions found over '''220''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''56''' reactions found over '''228''' reactions in the full pathway
 
−
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 
−
** '''18''' reactions found over '''75''' reactions in the full pathway
 
−
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 
−
** '''23''' reactions found over '''133''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 
−
** '''14''' reactions found over '''65''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
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** Source: [[manual-import_from_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
−
*** [[l_plantarum_wcfs1]]
+
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
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{{#set: in pathway=}}
−
* MetaNetX (MNX) Equation : MNXR100142
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{{#set: reconstruction category=manual}}
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* KEGG Reaction : R00945
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{{#set: reconstruction source=manual-import_from_medium}}
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* EC Number : 2.1.2.1
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
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{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Glycine hydroxymethyltransferase, reversible}}
+
−
{{#set: gene associated=EF2550}}
+
−
{{#set: in pathway=map01100|map00630|map01110|map01120|map00460|map01200|map01230|map00680|map00260|map01130|map00670}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 19:45, 18 March 2018

Reaction TransportSeed_pydxn

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Pyridoxine[e] => 1.0 Pyridoxine[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

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