Difference between revisions of "ALATA L2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RBP4E RBP4E] == * direction: ** REVERSIBLE * common name: ** L-ribulose-phosphate 4-epimerase * Syn...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS SERTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase * Synonym(s...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RBP4E RBP4E] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS SERTRS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-ribulose-phosphate 4-epimerase
+
** Seryl-tRNA synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ru5p__L]][c] '''<=>''' 1.0 [[xu5p__D]][c]
+
** 1.0 [[ser__L]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[trnaser]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[amp]][c] '''+''' 1.0 [[sertrna]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Ribulose 5-phosphate[c] '''<=>''' 1.0 D-Xylulose 5-phosphate[c]
+
** 1.0 L-Serine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 TRNA(Ser)[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Seryl-tRNA(Ser)[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1131]]
+
* [[EF0100]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF3292]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
+
** '''23''' reactions found over '''49''' reactions in the full pathway
−
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
+
−
** '''15''' reactions found over '''54''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''104''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
+
−
** '''7''' reactions found over '''50''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR104350
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22368 22368]
+
* KEGG Reaction : R03662
−
* BioCyc : META:RIBULPEPIM-RXN
+
* EC Number : 6.1.1.11
−
* MetaNetX (MNX) Equation : MNXR103434
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* KEGG Reaction : R05850
+
{{#set: common name=Seryl-tRNA synthetase}}
−
* EC Number : 5.1.3.4
+
{{#set: gene associated=EF0100|EF3292}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=map00970}}
−
{{#set: common name=L-ribulose-phosphate 4-epimerase}}
+
−
{{#set: gene associated=EF1131}}
+
−
{{#set: in pathway=map01100|map00040|map01120|map00053}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:45, 18 March 2018

Reaction SERTRS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Seryl-tRNA synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Serine[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 TRNA(Ser)[c] => 1.0 Diphosphate[c] + 1.0 AMP C10H12N5O7P[c] + 1.0 L-Seryl-tRNA(Ser)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104350
  • KEGG Reaction : R03662
  • EC Number : 6.1.1.11




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