Difference between revisions of "PPCDC"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SUCpts SUCpts] == * direction: ** LEFT-TO-RIGHT * common name: ** Sucrose transport via PEP:Pyr PTS...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SALSYN SALSYN] == * direction: ** LEFT-TO-RIGHT * common name: ** Salicylate synthase * Synonym(s):...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SUCpts SUCpts] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SALSYN SALSYN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Sucrose transport via PEP:Pyr PTS
+
** Salicylate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[sucr]][e] '''+''' 1.0 [[pep]][c] '''=>''' 1.0 [[suc6p]][c] '''+''' 1.0 [[pyr]][c]
+
** 1.0 [[ichor]][c] '''=>''' 1.0 [[salc]][c] '''+''' 1.0 [[pyr]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Sucrose C12H22O11[e] '''+''' 1.0 Phosphoenolpyruvate[c] '''=>''' 1.0 Sucrose 6-phosphate[c] '''+''' 1.0 Pyruvate[c]
+
** 1.0 Isochorismate[c] '''=>''' 1.0 Salicylate[c] '''+''' 1.0 Pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0710]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
−
* [[EF1601]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
* [[EF0709]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
−
* [[EF2435]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01053]]: [http://www.genome.jp/dbget-bin/www_bget?map01053 map01053]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[meneco]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR104643
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27874 27874]
 +
* EC Number : 4.2.99.21
 +
* MetaNetX (MNX) Equation : MNXR104269
 +
* KEGG Reaction : R06602
 +
* BioCyc : META:RXN-1981
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Sucrose transport via PEP:Pyr PTS}}
+
{{#set: common name=Salicylate synthase}}
−
{{#set: gene associated=EF0710|EF1601|EF0709|EF2435}}
+
{{#set: in pathway=map01130|map01110|map01053}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 19:46, 18 March 2018

Reaction SALSYN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Salicylate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Isochorismate[c] => 1.0 Salicylate[c] + 1.0 Pyruvate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.2.99.21
  • MetaNetX (MNX) Equation : MNXR104269
  • KEGG Reaction : R06602
  • BioCyc : META:RXN-1981




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