Difference between revisions of "IPPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr] == * direction: ** REVERSIBLE * common name: ** D-Glyceraldehyde dehydrogenase *...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-isopropylmalate synthase * Synonym(...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** D-Glyceraldehyde dehydrogenase
+
** 2-isopropylmalate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glyald]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''<=>''' 1.0 [[glyc__R]][c] '''+''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c]
+
** 1.0 [[accoa]][c] '''+''' 1.0 [[3mob]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[3c3hmp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[coa]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Glyceraldehyde[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''<=>''' 1.0 (R)-Glycerate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c]
+
** 1.0 Acetyl-CoA[c] '''+''' 1.0 3-Methyl-2-oxobutanoate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0253]]
+
* Gene: [[EF3317]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
 
−
** '''6''' reactions found over '''138''' reactions in the full pathway
 
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
* [[map00280]]: [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280]
+
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
−
** '''9''' reactions found over '''155''' reactions in the full pathway
+
** '''9''' reactions found over '''49''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
−
** '''104''' reactions found over '''715''' reactions in the full pathway
+
** '''14''' reactions found over '''80''' reactions in the full pathway
−
* [[map00981]]: [http://www.genome.jp/dbget-bin/www_bget?map00981 map00981]
+
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
** '''2''' reactions found over '''18''' reactions in the full pathway
+
** '''56''' reactions found over '''228''' reactions in the full pathway
−
* [[map00903]]: [http://www.genome.jp/dbget-bin/www_bget?map00903 map00903]
+
−
** '''2''' reactions found over '''30''' reactions in the full pathway
+
−
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
+
−
** '''6''' reactions found over '''90''' reactions in the full pathway
+
−
* [[map00625]]: [http://www.genome.jp/dbget-bin/www_bget?map00625 map00625]
+
−
** '''3''' reactions found over '''25''' reactions in the full pathway
+
−
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
+
−
** '''22''' reactions found over '''149''' reactions in the full pathway
+
 
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 
** '''31''' reactions found over '''163''' reactions in the full pathway
 
** '''31''' reactions found over '''163''' reactions in the full pathway
−
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
 
−
** '''7''' reactions found over '''163''' reactions in the full pathway
 
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 
−
** '''24''' reactions found over '''149''' reactions in the full pathway
 
−
* [[map00053]]: [http://www.genome.jp/dbget-bin/www_bget?map00053 map00053]
 
−
** '''7''' reactions found over '''50''' reactions in the full pathway
 
−
* [[map00071]]: [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071]
 
−
** '''3''' reactions found over '''167''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00561]]: [http://www.genome.jp/dbget-bin/www_bget?map00561 map00561]
 
−
** '''7''' reactions found over '''83''' reactions in the full pathway
 
−
* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
 
−
** '''8''' reactions found over '''91''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30783 30783]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
−
* Reactome : REACT_R-ATH-6813749
+
* BioCyc : META:2-ISOPROPYLMALATESYN-RXN
−
* MetaNetX (MNX) Equation : MNXR100310
+
* MetaNetX (MNX) Equation : MNXR100879
−
* KEGG Reaction : R01752
+
* KEGG Reaction : R01213
−
* EC Number : 1.2.1.3
+
* EC Number : 2.3.3.13
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=D-Glyceraldehyde dehydrogenase}}
+
{{#set: common name=2-isopropylmalate synthase}}
−
{{#set: gene associated=EF0253}}
+
{{#set: gene associated=EF3317}}
−
{{#set: in pathway=map01100|map00310|map01110|map00280|map01120|map00981|map00903|map00340|map00625|map00330|map00620|map00380|map00010|map00053|map00071|map01130|map00561|map00410}}
+
{{#set: in pathway=map01100|map01110|map00290|map01210|map01230|map00620}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:06, 21 March 2018

Reaction IPPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-isopropylmalate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Acetyl-CoA[c] + 1.0 3-Methyl-2-oxobutanoate[c] + 1.0 H2O H2O[c] => 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c] + 1.0 H+[c] + 1.0 Coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:2-ISOPROPYLMALATESYN-RXN
  • MetaNetX (MNX) Equation : MNXR100879
  • KEGG Reaction : R01213
  • EC Number : 2.3.3.13




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