Difference between revisions of "THDPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/THDPS THDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Tetrahydrodipicolinate succinylase...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/THDPS THDPS] ==
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* common_name:
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* direction:
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** Arginine and proline metabolism
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** LEFT-TO-RIGHT
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* common name:
 +
** Tetrahydrodipicolinate succinylase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''22''' reactions found over '''149''' reactions in the full pathway
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* With identifiers:
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* [[ABUTD]]
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** 1.0 [[thdp]][c] '''+''' 1.0 [[succoa]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[coa]][c] '''+''' 1.0 [[sl2a6o]][c]
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* [[ADMDC]]
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* With common name(s):
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* [[ASPTA]]
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** 1.0 2,3,4,5-Tetrahydrodipicolinate[c] '''+''' 1.0 Succinyl-CoA[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Coenzyme A[c] '''+''' 1.0 N-Succinyl-2-L-amino-6-oxoheptanedioate[c]
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* [[CKc]]
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* [[CRTNsyn]]
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== Genes associated with this reaction  ==
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* [[CSND]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[CSPMDDC]]
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* Gene: [[EF1133]]
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* [[CSPMDDH]]
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** Source: [[orthology-l_plantarum_wcfs1]]
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* [[EHGLAT]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[G5SD]]
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== Pathways  ==
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* [[GACMTRc]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[GGGABAH]]
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** '''460''' reactions found over '''2349''' reactions in the full pathway
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* [[GLU5K]]
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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* [[GLYALDDr]]
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** '''104''' reactions found over '''715''' reactions in the full pathway
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* [[GLYAMDTRc]]
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* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
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* [[MCSNAH]]
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** '''13''' reactions found over '''34''' reactions in the full pathway
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* [[ORNDC]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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* [[P5CR]]
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** '''56''' reactions found over '''228''' reactions in the full pathway
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* [[PTRCTA]]
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== Reconstruction information  ==
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* [[SPMDAT1]]
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* Category: [[orthology]]
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* [[SPMDAT2]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[SPMS]]
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*** Tool: [[pantograph]]
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== Reaction(s) not found ==
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** Source: [[orthology-l_plantarum_wcfs1]]
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* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
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*** Tool: [[pantograph]]
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* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
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* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
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* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
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* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
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* [http://bigg.ucsd.edu/universal/reactions/4HGLSD 4HGLSD]
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* [http://bigg.ucsd.edu/universal/reactions/4HGLSDm 4HGLSDm]
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* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
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* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
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* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
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* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
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* [http://bigg.ucsd.edu/universal/reactions/AABHH AABHH]
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* [http://bigg.ucsd.edu/universal/reactions/AABTN AABTN]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
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* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
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* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
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* [http://bigg.ucsd.edu/universal/reactions/AGDI AGDI]
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* [http://bigg.ucsd.edu/universal/reactions/AGDIn AGDIn]
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* [http://bigg.ucsd.edu/universal/reactions/AGMDA AGMDA]
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* [http://bigg.ucsd.edu/universal/reactions/AGMT AGMT]
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* [http://bigg.ucsd.edu/universal/reactions/AGMTm AGMTm]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_D ALATA_D]
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* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
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* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
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* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
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* [http://bigg.ucsd.edu/universal/reactions/AMID AMID]
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* [http://bigg.ucsd.edu/universal/reactions/AMID2 AMID2]
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* [http://bigg.ucsd.edu/universal/reactions/AMID3 AMID3]
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* [http://bigg.ucsd.edu/universal/reactions/AMID4 AMID4]
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* [http://bigg.ucsd.edu/universal/reactions/AMID5 AMID5]
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* [http://bigg.ucsd.edu/universal/reactions/AMID_1 AMID_1]
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* [http://bigg.ucsd.edu/universal/reactions/AMPTASECG AMPTASECG]
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* [http://bigg.ucsd.edu/universal/reactions/AMPTASECGe AMPTASECGe]
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* [http://bigg.ucsd.edu/universal/reactions/APAPTm APAPTm]
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* [http://bigg.ucsd.edu/universal/reactions/APCS APCS]
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* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
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* [http://bigg.ucsd.edu/universal/reactions/ARGDC ARGDC]
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* [http://bigg.ucsd.edu/universal/reactions/ARGDCm ARGDCm]
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* [http://bigg.ucsd.edu/universal/reactions/ARGDCpp ARGDCpp]
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* [http://bigg.ucsd.edu/universal/reactions/ARGN ARGN]
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* [http://bigg.ucsd.edu/universal/reactions/ARGNm ARGNm]
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* [http://bigg.ucsd.edu/universal/reactions/ARUH ARUH]
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* [http://bigg.ucsd.edu/universal/reactions/ASAPT ASAPT]
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* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
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* [http://bigg.ucsd.edu/universal/reactions/AST AST]
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* [http://bigg.ucsd.edu/universal/reactions/CK CK]
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* [http://bigg.ucsd.edu/universal/reactions/CMPA CMPA]
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* [http://bigg.ucsd.edu/universal/reactions/CRTNh CRTNh]
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* [http://bigg.ucsd.edu/universal/reactions/DALAOX DALAOX]
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* [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
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* [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
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* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
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* [http://bigg.ucsd.edu/universal/reactions/DIAT DIAT]
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* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
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* [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
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* [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
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* [http://bigg.ucsd.edu/universal/reactions/EHGLATm EHGLATm]
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* [http://bigg.ucsd.edu/universal/reactions/EHGLATp EHGLATp]
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* [http://bigg.ucsd.edu/universal/reactions/G5DHx G5DHx]
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* [http://bigg.ucsd.edu/universal/reactions/G5SADrm G5SADrm]
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* [http://bigg.ucsd.edu/universal/reactions/G5SADs G5SADs]
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* [http://bigg.ucsd.edu/universal/reactions/G5SD2 G5SD2]
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* [http://bigg.ucsd.edu/universal/reactions/G5SDym G5SDym]
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* [http://bigg.ucsd.edu/universal/reactions/GDBTALDH GDBTALDH]
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* [http://bigg.ucsd.edu/universal/reactions/GGGABADr GGGABADr]
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* [http://bigg.ucsd.edu/universal/reactions/GGPTRCS GGPTRCS]
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* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
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* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
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* [http://bigg.ucsd.edu/universal/reactions/GLU5Km GLU5Km]
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* [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
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* [http://bigg.ucsd.edu/universal/reactions/GUDBUTNAH GUDBUTNAH]
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* [http://bigg.ucsd.edu/universal/reactions/HPROa HPROa]
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* [http://bigg.ucsd.edu/universal/reactions/HPROb HPROb]
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* [http://bigg.ucsd.edu/universal/reactions/HPROx HPROx]
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* [http://bigg.ucsd.edu/universal/reactions/HPROxm HPROxm]
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* [http://bigg.ucsd.edu/universal/reactions/HPROym HPROym]
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* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
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* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
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* [http://bigg.ucsd.edu/universal/reactions/LALGP LALGP]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
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* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
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* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
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* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
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* [http://bigg.ucsd.edu/universal/reactions/NOPD NOPD]
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* [http://bigg.ucsd.edu/universal/reactions/NOS NOS]
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* [http://bigg.ucsd.edu/universal/reactions/NOS1 NOS1]
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* [http://bigg.ucsd.edu/universal/reactions/NOS2 NOS2]
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* [http://bigg.ucsd.edu/universal/reactions/NOS2_1 NOS2_1]
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* [http://bigg.ucsd.edu/universal/reactions/OARGDC OARGDC]
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* [http://bigg.ucsd.edu/universal/reactions/ORDCh ORDCh]
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* [http://bigg.ucsd.edu/universal/reactions/ORNCD ORNCD]
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* [http://bigg.ucsd.edu/universal/reactions/ORNTA ORNTA]
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* [http://bigg.ucsd.edu/universal/reactions/ORNTArm ORNTArm]
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* [http://bigg.ucsd.edu/universal/reactions/P5CD P5CD]
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* [http://bigg.ucsd.edu/universal/reactions/P5CDm P5CDm]
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* [http://bigg.ucsd.edu/universal/reactions/P5CRm P5CRm]
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* [http://bigg.ucsd.edu/universal/reactions/P5CRx P5CRx]
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* [http://bigg.ucsd.edu/universal/reactions/P5CRxm P5CRxm]
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* [http://bigg.ucsd.edu/universal/reactions/PHCD PHCD]
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* [http://bigg.ucsd.edu/universal/reactions/PHCDm PHCDm]
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* [http://bigg.ucsd.edu/universal/reactions/PHCHGS PHCHGS]
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* [http://bigg.ucsd.edu/universal/reactions/PHCHGSm PHCHGSm]
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* [http://bigg.ucsd.edu/universal/reactions/POLYAO2 POLYAO2]
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* [http://bigg.ucsd.edu/universal/reactions/POLYAO3 POLYAO3]
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* [http://bigg.ucsd.edu/universal/reactions/PRO1x PRO1x]
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* [http://bigg.ucsd.edu/universal/reactions/PRO1xm PRO1xm]
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* [http://bigg.ucsd.edu/universal/reactions/PRO1y PRO1y]
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* [http://bigg.ucsd.edu/universal/reactions/PROAKGOX1 PROAKGOX1]
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* [http://bigg.ucsd.edu/universal/reactions/PROAKGOX1r PROAKGOX1r]
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* [http://bigg.ucsd.edu/universal/reactions/PROD2 PROD2]
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* [http://bigg.ucsd.edu/universal/reactions/PROD2m PROD2m]
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* [http://bigg.ucsd.edu/universal/reactions/PTRCAT1 PTRCAT1]
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* [http://bigg.ucsd.edu/universal/reactions/PUTA3 PUTA3]
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* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
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* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
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* [http://bigg.ucsd.edu/universal/reactions/SADH SADH]
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* [http://bigg.ucsd.edu/universal/reactions/SGDS SGDS]
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* [http://bigg.ucsd.edu/universal/reactions/SGSAD SGSAD]
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* [http://bigg.ucsd.edu/universal/reactions/SOTA SOTA]
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* [http://bigg.ucsd.edu/universal/reactions/SPRMS SPRMS]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Arginine and proline metabolism}}
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* RHEA:
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{{#set: reaction found=22}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17325 17325]
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{{#set: reaction not found=149}}
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* BioCyc : META:TETHYDPICSUCC-RXN
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{{#set: completion rate=15.0}}
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* MetaNetX (MNX) Equation : MNXR104806
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* KEGG Reaction : R04365
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* EC Number : 2.3.1.117
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Tetrahydrodipicolinate succinylase}}
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{{#set: gene associated=EF1133}}
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{{#set: in pathway=map01100|map01120|map00300|map01230}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:06, 21 March 2018

Reaction THDPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tetrahydrodipicolinate succinylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2,3,4,5-Tetrahydrodipicolinate[c] + 1.0 Succinyl-CoA[c] + 1.0 H2O H2O[c] => 1.0 Coenzyme A[c] + 1.0 N-Succinyl-2-L-amino-6-oxoheptanedioate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:TETHYDPICSUCC-RXN
  • MetaNetX (MNX) Equation : MNXR104806
  • KEGG Reaction : R04365
  • EC Number : 2.3.1.117




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