Difference between revisions of "DXPS"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00621 map00621] == * common_name: ** Dioxin degradation * Synonym(s): == Reaction(s) found == * ''...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DXPS DXPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-D-xylulose 5-phosphate syntha...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00621 map00621] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DXPS DXPS] ==
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* common_name:
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* direction:
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** Dioxin degradation
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** LEFT-TO-RIGHT
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* common name:
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** 1-deoxy-D-xylulose 5-phosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[ACALD]]
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** 1.0 [[h]][c] '''+''' 1.0 [[pyr]][c] '''+''' 1.0 [[g3p]][c] '''=>''' 1.0 [[dxyl5p]][c] '''+''' 1.0 [[co2]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* '''6''' reaction(s) not found
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** 1.0 H+[c] '''+''' 1.0 Pyruvate[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c] '''=>''' 1.0 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1.0 CO2 CO2[c]
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** [http://bigg.ucsd.edu/universal/reactions/4OD2 4OD2]
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** [http://bigg.ucsd.edu/universal/reactions/OP4ENH OP4ENH]
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== Genes associated with this reaction ==
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** [http://bigg.ucsd.edu/universal/reactions/4OT2 4OT2]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
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* Gene: [[EF1354]]
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** [http://bigg.ucsd.edu/universal/reactions/HOPNTAL HOPNTAL]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** [http://bigg.ucsd.edu/universal/reactions/OMAHY OMAHY]
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* Gene: [[EF1659]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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== Pathways  ==
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* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
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** '''11''' reactions found over '''24''' reactions in the full pathway
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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** '''135''' reactions found over '''694''' reactions in the full pathway
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** '''179''' reactions found over '''1054''' reactions in the full pathway
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''460''' reactions found over '''2349''' reactions in the full pathway
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* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
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** '''14''' reactions found over '''67''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: common_name=Dioxin degradation}}
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* RHEA:
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{{#set: reaction found=1}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
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{{#set: reaction not found=6}}
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* BioCyc : META:DXS-RXN
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* MetaNetX (MNX) Equation : MNXR97831
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* KEGG Reaction : R05636
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* EC Number : 2.2.1.7
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=1-deoxy-D-xylulose 5-phosphate synthase}}
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{{#set: gene associated=EF1354|EF1659}}
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{{#set: in pathway=map00730|map01130|map01110|map01100|map00900}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:07, 21 March 2018

Reaction DXPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-D-xylulose 5-phosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Pyruvate[c] + 1.0 Glyceraldehyde 3-phosphate[c] => 1.0 1-deoxy-D-xylulose 5-phosphate[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DXS-RXN
  • MetaNetX (MNX) Equation : MNXR97831
  • KEGG Reaction : R05636
  • EC Number : 2.2.1.7




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