Difference between revisions of "Map00030"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPND PPND] == * direction: ** LEFT-TO-RIGHT * common name: ** Prephenate dehydrogenase * Synonym(s)...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030] == * common_name: ** Pentose phosphate pathway * Synonym(s): == Reaction(s) found...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PPND PPND] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Pentose phosphate pathway
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* common name:
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** Prephenate dehydrogenase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''26''' reactions found over '''69''' reactions in the full pathway
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** 1.0 [[pphn]][c] '''+''' 1.0 [[nad]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[34hpp]][c]
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* [[DDGLK]]
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* With common name(s):
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** 3 associated gene(s):
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** 1.0 Prephenate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 3-(4-Hydroxyphenyl)pyruvate[c]
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*** [[EF0424]]
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*** [[EF0840]]
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== Genes associated with this reaction  ==
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*** [[EF2265]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* [[EF1565]]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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== Pathways  ==
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* [[DDPGALA]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* [[orthology]]:
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*** [[EF2266]]
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** [[pantograph]]:
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*** [[EF0423]]
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*** [[l_plantarum_wcfs1]]
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** 1 reconstruction source(s) associated:
−
*** [[b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[DKGLCNR2y]]
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** 1 associated gene(s):
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*** [[EF3141]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[DRBK]]
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** 1 associated gene(s):
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*** [[EF2961]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[DRPA]]
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** 1 associated gene(s):
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*** [[EF0174]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[EDA]]
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** 3 associated gene(s):
 +
*** [[EF2266]]
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*** [[EF0423]]
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*** [[EF3134]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[FBA]]
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** 1 associated gene(s):
 +
*** [[EF1167]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[FBA2]]
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** 1 associated gene(s):
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*** [[EF1167]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[FBP]]
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** 1 associated gene(s):
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*** [[EF1503]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[G6PDH2r]]
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** 1 associated gene(s):
 +
*** [[EF1004]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[G6PI]]
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** 1 associated gene(s):
 +
*** [[EF1416]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[GLYCK2]]
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** 1 associated gene(s):
 +
*** [[EF2646]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[GND]]
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** 2 associated gene(s):
 +
*** [[EF3142]]
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*** [[EF1049]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[GNK]]
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** 1 associated gene(s):
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*** [[EF3235]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-l_plantarum_wcfs1]]
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* [[PFK]]
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** 4 associated gene(s):
 +
*** [[EF1045]]
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*** [[EF1806]]
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*** [[EF0718]]
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*** [[EF0693]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[PFK_3]]
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** 1 associated gene(s):
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*** [[EF1045]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[PGI]]
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** 1 associated gene(s):
 +
*** [[EF1416]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[PGL]]
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** 1 associated gene(s):
 +
*** [[EF1918]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[PPM2]]
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** 1 associated gene(s):
 +
*** [[EF0185]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[PRPPS]]
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** 2 associated gene(s):
 +
*** [[EF3163]]
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*** [[EF2073]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RBK]]
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** 1 associated gene(s):
 +
*** [[EF2961]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[RPE]]
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** 1 associated gene(s):
 +
*** [[EF3118]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[RPI]]
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** 3 associated gene(s):
 +
*** [[EF0197]]
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*** [[EF1835]]
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*** [[EF1834]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[TALA]]
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** 1 associated gene(s):
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*** [[EF3304]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[TKT1]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[TKT2]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2DGLCNRy 2DGLCNRy]
 +
* [http://bigg.ucsd.edu/universal/reactions/2DHGLCK 2DHGLCK]
 +
* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
 +
* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
 +
* [http://bigg.ucsd.edu/universal/reactions/DASCBH DASCBH]
 +
* [http://bigg.ucsd.edu/universal/reactions/EDD EDD]
 +
* [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3]
 +
* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
 +
* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
 +
* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PADH G6PADH]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PADHh G6PADHh]
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* [http://bigg.ucsd.edu/universal/reactions/G6PBDH G6PBDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PBDHh G6PBDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PDH1 G6PDH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PDH1er G6PDH1er]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PDH2er G6PDH2er]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PI2 G6PI2]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PI3 G6PI3]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PI_1 G6PI_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/G6PIh G6PIh]
 +
* [http://bigg.ucsd.edu/universal/reactions/GADktpp GADktpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GNDer GNDer]
 +
* [http://bigg.ucsd.edu/universal/reactions/GNKh GNKh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFK_adp PFK_adp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFK_ppi PFK_ppi]
 +
* [http://bigg.ucsd.edu/universal/reactions/PFKh PFKh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGDHh PGDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGIA PGIA]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGIAh PGIAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGIBh PGIBh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLCNDH PGLCNDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLer PGLer]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLh PGLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/R15BPK R15BPK]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPDPK RPDPK]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
 +
* [http://bigg.ucsd.edu/universal/reactions/TAh TAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/TKT1h TKT1h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TKT2h TKT2h]
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: common_name=Pentose phosphate pathway}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13869 13869]
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{{#set: reaction found=26}}
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* BioCyc : META:PREPHENATEDEHYDROG-RXN
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{{#set: total reaction=69}}
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* MetaNetX (MNX) Equation : MNXR103121
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{{#set: completion rate=38.0}}
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* KEGG Reaction : R01728
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−
* EC Number : 1.3.1.12
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−
{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=Prephenate dehydrogenase}}
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−
{{#set: gene associated=EF1565}}
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−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Latest revision as of 15:09, 21 March 2018

Pathway map00030

  • common_name:
    • Pentose phosphate pathway
  • Synonym(s):

Reaction(s) found

26 reactions found over 69 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=Map00030&oldid=8854"