Difference between revisions of "Map00710"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAIS PRAIS] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoribosylaminoimidazole syntha...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] == * common_name: ** Carbon fixation in photosynthetic organisms * Synonym(s): ==...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAIS PRAIS] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Carbon fixation in photosynthetic organisms
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* common name:
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** Phosphoribosylaminoimidazole synthase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''16''' reactions found over '''71''' reactions in the full pathway
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** 1.0 [[fpram]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[air]][c]
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* [[ALATA_L]]
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* With common name(s):
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** 3 associated gene(s):
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** 1.0 2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 2.0 H+[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole[c]
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*** [[EF2372]]
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*** [[EF1314]]
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== Genes associated with this reaction  ==
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*** [[EF1706]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[EF1780]]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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* [[ASPTA]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[EF2372]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** 2 reconstruction source(s) associated:
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** '''508''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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*** [[orthology-l_plantarum_wcfs1]]
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** '''156''' reactions found over '''694''' reactions in the full pathway
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* [[FBA]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** 1 associated gene(s):
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** '''218''' reactions found over '''1054''' reactions in the full pathway
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*** [[EF1167]]
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* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
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** 3 reconstruction source(s) associated:
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** '''98''' reactions found over '''298''' reactions in the full pathway
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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== Reconstruction information  ==
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[orthology]]:
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*** [[orthology-l_plantarum_wcfs1]]
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** [[pantograph]]:
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* [[FBA2]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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** 1 associated gene(s):
−
*** [[l_plantarum_wcfs1]]
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*** [[EF1167]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[FBP]]
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** 1 associated gene(s):
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*** [[EF1503]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[GAPD]]
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** 2 associated gene(s):
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*** [[EF1526]]
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*** [[EF1964]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[GAPDi_nadp]]
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** 2 associated gene(s):
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*** [[EF1964]]
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*** [[EF1526]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[MDH]]
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** 3 associated gene(s):
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*** [[EF0641]]
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*** [[EF0255]]
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*** [[EF0388]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[ME1]]
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** 1 associated gene(s):
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*** [[EF3316]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[ME2]]
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** 2 associated gene(s):
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*** [[EF1206]]
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*** [[EF3316]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[PGK]]
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** 1 associated gene(s):
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*** [[EF1963]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RPE]]
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** 1 associated gene(s):
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*** [[EF3118]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RPI]]
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** 3 associated gene(s):
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*** [[EF0197]]
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*** [[EF1835]]
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*** [[EF1834]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[TKT1]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[TKT2]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[TPI]]
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** 1 associated gene(s):
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*** [[EF1962]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
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* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
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* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
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* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
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* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
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* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
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* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDH_nadp_hi GAPDH_nadp_hi]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHf GAPDHf]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHh GAPDHh]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHm GAPDHm]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
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* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
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* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
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* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
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* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
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* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
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* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
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* [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
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* [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
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* [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
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* [http://bigg.ucsd.edu/universal/reactions/PGKf PGKf]
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* [http://bigg.ucsd.edu/universal/reactions/PGKh PGKh]
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* [http://bigg.ucsd.edu/universal/reactions/PGKm PGKm]
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* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
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* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
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* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
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* [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
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* [http://bigg.ucsd.edu/universal/reactions/PRUK PRUK]
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* [http://bigg.ucsd.edu/universal/reactions/PRUK_1 PRUK_1]
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* [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
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* [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
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* [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBP SBP]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBP_1 SBP_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/TKT1h TKT1h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TKT2h TKT2h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common_name=Carbon fixation in photosynthetic organisms}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23032 23032]
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{{#set: reaction found=16}}
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* MetaNetX (MNX) Equation : MNXR103157
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{{#set: total reaction=71}}
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* EC Number : 6.3.3.1
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{{#set: completion rate=23.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=Phosphoribosylaminoimidazole synthase}}
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−
{{#set: gene associated=EF1780}}
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−
{{#set: in pathway=map01100|map01130|map01110|map00230}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
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Latest revision as of 15:10, 21 March 2018

Pathway map00710

  • common_name:
    • Carbon fixation in photosynthetic organisms
  • Synonym(s):

Reaction(s) found

16 reactions found over 71 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=Map00710&oldid=8927"