Difference between revisions of "PPNDH"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACCOAC ACCOAC] == * direction: ** LEFT-TO-RIGHT * common name: ** Acetyl-CoA carboxylase * Synonym(...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPNDH PPNDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Prephenate dehydratase * Synonym(s)...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACCOAC ACCOAC] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PPNDH PPNDH] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Acetyl-CoA carboxylase
+
** Prephenate dehydratase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[accoa]][c] '''+''' 1.0 [[hco3]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[malcoa]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[pphn]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[phpyr]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[co2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Acetyl-CoA[c] '''+''' 1.0 Bicarbonate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Malonyl CoA C24H33N7O19P3S[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c]
+
** 1.0 Prephenate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Phenylpyruvate[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 CO2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2875]]
+
* Gene: [[EF1568]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF2876]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF2879]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF2877]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF3240]]
+
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map00640]]: [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640]
+
−
** '''15''' reactions found over '''143''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
−
** '''36''' reactions found over '''182''' reactions in the full pathway
+
−
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
+
−
** '''17''' reactions found over '''157''' reactions in the full pathway
+
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
+
−
** '''31''' reactions found over '''163''' reactions in the full pathway
+
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
+
−
** '''65''' reactions found over '''160''' reactions in the full pathway
+
−
* [[map00254]]: [http://www.genome.jp/dbget-bin/www_bget?map00254 map00254]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
−
** '''50''' reactions found over '''220''' reactions in the full pathway
+
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''156''' reactions found over '''694''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 +
** '''13''' reactions found over '''59''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* BioCyc : META:PREPHENATEDEHYDRAT-RXN
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11308 11308]
+
* MetaNetX (MNX) Equation : MNXR103123
−
* BioCyc : META:ACETYL-COA-CARBOXYLTRANSFER-RXN
+
* KEGG Reaction : R01373
−
* MetaNetX (MNX) Equation : MNXR95219
+
* EC Number : 4.2.1.51
−
* KEGG Reaction : R00742
+
−
* EC Number : 6.4.1.2
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Acetyl-CoA carboxylase}}
+
{{#set: common name=Prephenate dehydratase}}
−
{{#set: gene associated=EF2875|EF2876|EF2879|EF2877|EF3240}}
+
{{#set: gene associated=EF1568}}
−
{{#set: in pathway=map01100|map01110|map00640|map01120|map01212|map00720|map00620|map00061|map00254|map01200|map01130}}
+
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:17, 21 March 2018

Reaction PPNDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Prephenate dehydratase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Prephenate[c] + 1.0 H+[c] => 1.0 Phenylpyruvate[c] + 1.0 H2O H2O[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:PREPHENATEDEHYDRAT-RXN
  • MetaNetX (MNX) Equation : MNXR103123
  • KEGG Reaction : R01373
  • EC Number : 4.2.1.51




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=PPNDH&oldid=9467"