Difference between revisions of "NTD5"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/G3POc G3POc] == * direction: ** LEFT-TO-RIGHT * common name: ** glycerol 3 phosphate oxidase * Syno...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD5 NTD5] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (dTMP) * Synonym(s):...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/G3POc G3POc] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD5 NTD5] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glycerol 3 phosphate oxidase
+
** 5'-nucleotidase (dTMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glyc3p]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[dhap]][c] '''+''' 1.0 [[h2o2]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[dtmp]][c] '''=>''' 1.0 [[thymd]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glycerol 3-phosphate[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 Dihydroxyacetone phosphate[c] '''+''' 1.0 Hydrogen peroxide[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 DTMP C10H13N2O8P[c] '''=>''' 1.0 Thymidine C10H14N2O5[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1928]]
+
* Gene: [[EF0822]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF0062]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[curation_from_orthology]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11080 11080]
 +
* BioCyc : META:THYMIDYLATE-5-PHOSPHATASE-RXN
 +
* MetaNetX (MNX) Equation : MNXR102035
 +
* KEGG Reaction : R01569
 +
* EC Number : 3.1.3.35
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glycerol 3 phosphate oxidase}}
+
{{#set: common name=5'-nucleotidase (dTMP)}}
−
{{#set: gene associated=EF1928}}
+
{{#set: gene associated=EF0822|EF0062}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map00240|map01100}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=l_plantarum_wcfs1}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=curation_from_orthology}}
 

Latest revision as of 15:20, 21 March 2018

Reaction NTD5

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase (dTMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 DTMP C10H13N2O8P[c] => 1.0 Thymidine C10H14N2O5[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:THYMIDYLATE-5-PHOSPHATASE-RXN
  • MetaNetX (MNX) Equation : MNXR102035
  • KEGG Reaction : R01569
  • EC Number : 3.1.3.35




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