Difference between revisions of "OCTDPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TALA TALA] == * direction: ** REVERSIBLE * common name: ** Transaldolase * Synonym(s): == Reaction...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/OCTDPS OCTDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Octaprenyl pyrophosphate synthase...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TALA TALA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/OCTDPS OCTDPS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Transaldolase
+
** Octaprenyl pyrophosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[s7p]][c] '''+''' 1.0 [[g3p]][c] '''<=>''' 1.0 [[e4p]][c] '''+''' 1.0 [[f6p]][c]
+
** 1.0 [[frdp]][c] '''+''' 5.0 [[ipdp]][c] '''=>''' 1.0 [[octdp]][c] '''+''' 5.0 [[ppi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Sedoheptulose 7-phosphate[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c] '''<=>''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 D-Fructose 6-phosphate[c]
+
** 1.0 Farnesyl diphosphate[c] '''+''' 5.0 Isopentenyl diphosphate[c] '''=>''' 1.0 All-trans-Octaprenyl diphosphate[c] '''+''' 5.0 Diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF3304]]
+
* Gene: [[EF2057]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF3260]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''156''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 
−
** '''26''' reactions found over '''69''' reactions in the full pathway
 
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
−
** '''111''' reactions found over '''715''' reactions in the full pathway
+
** '''14''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27798 27798]
−
* BioCyc : META:TRANSALDOL-RXN
+
* BioCyc : META:RXN-8992
−
* MetaNetX (MNX) Equation : MNXR104715
+
* MetaNetX (MNX) Equation : MNXR102153
−
* KEGG Reaction : R01827
+
* KEGG Reaction : R09248
−
* EC Number : 2.2.1.2
+
* EC Number : 2.5.1.90
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Transaldolase}}
+
{{#set: common name=Octaprenyl pyrophosphate synthase}}
−
{{#set: gene associated=EF3304}}
+
{{#set: gene associated=EF2057|EF3260}}
−
{{#set: in pathway=map01100|map01130|map00030|map01110|map01120}}
+
{{#set: in pathway=map01110|map00900}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:17, 21 March 2018

Reaction OCTDPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Octaprenyl pyrophosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Farnesyl diphosphate[c] + 5.0 Isopentenyl diphosphate[c] => 1.0 All-trans-Octaprenyl diphosphate[c] + 5.0 Diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-8992
  • MetaNetX (MNX) Equation : MNXR102153
  • KEGG Reaction : R09248
  • EC Number : 2.5.1.90




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