Difference between revisions of "RNDR2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYDHDA GLYDHDA] == * direction: ** REVERSIBLE * common name: ** Gylcine dehydrogenase (deamidating...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR2 RNDR2] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYDHDA GLYDHDA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR2 RNDR2] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Gylcine dehydrogenase (deamidating)
+
** Ribonucleoside-diphosphate reductase (GDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nad]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[h2o]][c] '''<=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[glx]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c]
+
** 1.0 [[trdrd]][c] '''+''' 1.0 [[gdp]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[dgdp]][c] '''+''' 1.0 [[trdox]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 H2O H2O[c] '''<=>''' 1.0 Ammonium[c] '''+''' 1.0 Glyoxylate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
+
** 1.0 Reduced thioredoxin[c] '''+''' 1.0 GDP C10H12N5O11P2[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 DGDP C10H12N5O10P2[c] '''+''' 1.0 Oxidized thioredoxin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF0472]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0470]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0471]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 +
** '''10''' reactions found over '''39''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* BioCyc : META:GDPREDUCT-RXN
−
{{#set: common name=Gylcine dehydrogenase (deamidating)}}
+
* MetaNetX (MNX) Equation : MNXR104062
−
{{#set: in pathway=}}
+
* KEGG Reaction : R02019
−
{{#set: reconstruction category=gap-filling}}
+
* EC Number : 1.17.4.1
−
{{#set: reconstruction tool=meneco}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: common name=Ribonucleoside-diphosphate reductase (GDP)}}
 +
{{#set: gene associated=EF0472|EF0470|EF0471}}
 +
{{#set: in pathway=map00240|map01100|map00480|map00230}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:28, 21 March 2018

Reaction RNDR2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase (GDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Reduced thioredoxin[c] + 1.0 GDP C10H12N5O11P2[c] => 1.0 H2O H2O[c] + 1.0 DGDP C10H12N5O10P2[c] + 1.0 Oxidized thioredoxin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:GDPREDUCT-RXN
  • MetaNetX (MNX) Equation : MNXR104062
  • KEGG Reaction : R02019
  • EC Number : 1.17.4.1




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