Difference between revisions of "DKII"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS2 SERTRS2] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase (selenocy...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DKII DKII] == * direction: ** LEFT-TO-RIGHT * common name: ** 2 dehydro 3 deoxy D gluconate 5 dehyd...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERTRS2 SERTRS2] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DKII DKII] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Seryl-tRNA synthetase (selenocystein)
+
** 2 dehydro 3 deoxy D gluconate 5 dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[trnasecys]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[ser__L]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[sertrna_sec]][c] '''+''' 1.0 [[ppi]][c]
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** 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[46dh25dohxn]][c] '''=>''' 1.0 [[nad]][c] '''+''' 1.0 [[2ddglcn]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 TRNA(SeCys)[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Serine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Seryl-tRNA(Sec)[c] '''+''' 1.0 Diphosphate[c]
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** 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 4S  4 6 Dihydroxy 2 5 dioxohexanoate C6H7O6[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 2-Dehydro-3-deoxy-D-gluconate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0100]]
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* Gene: [[EF2263]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
* [[EF3292]]
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* Gene: [[EF0426]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
 
** '''23''' reactions found over '''49''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[orthology]]
** [[pantograph]]:
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR104309
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* MetaNetX (MNX) Equation : MNXR97493
* EC Number : 6.1.1.11
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{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Seryl-tRNA synthetase (selenocystein)}}
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{{#set: common name=2 dehydro 3 deoxy D gluconate 5 dehydrogenase}}
{{#set: gene associated=EF0100|EF3292}}
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{{#set: gene associated=EF2263|EF0426}}
{{#set: in pathway=map00970}}
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{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Latest revision as of 15:34, 21 March 2018

Reaction DKII

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2 dehydro 3 deoxy D gluconate 5 dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 4S 4 6 Dihydroxy 2 5 dioxohexanoate C6H7O6[c] => 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 2-Dehydro-3-deoxy-D-gluconate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR97493