Difference between revisions of "TMDS"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADSS ADSS] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylosuccinate synthase * Synonym(s...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMDS TMDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Thymidylate synthase * Synonym(s): =...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ADSS ADSS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMDS TMDS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Adenylosuccinate synthase
+
** Thymidylate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[imp]][c] '''+''' 1.0 [[gtp]][c] '''+''' 1.0 [[asp__L]][c] '''=>''' 1.0 [[pi]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[gdp]][c] '''+''' 1.0 [[dcamp]][c]
+
** 1.0 [[dump]][c] '''+''' 1.0 [[mlthf]][c] '''=>''' 1.0 [[dtmp]][c] '''+''' 1.0 [[dhf]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 IMP C10H11N4O8P[c] '''+''' 1.0 GTP C10H12N5O14P3[c] '''+''' 1.0 L-Aspartate[c] '''=>''' 1.0 Phosphate[c] '''+''' 2.0 H+[c] '''+''' 1.0 GDP C10H12N5O11P2[c] '''+''' 1.0 N6-(1,2-Dicarboxyethyl)-AMP[c]
+
** 1.0 DUMP C9H11N2O8P[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c] '''=>''' 1.0 DTMP C10H13N2O8P[c] '''+''' 1.0 7,8-Dihydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0014]]
+
* Gene: [[EF1576]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
−
** '''27''' reactions found over '''93''' reactions in the full pathway
+
** '''14''' reactions found over '''65''' reactions in the full pathway
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
−
** '''98''' reactions found over '''298''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15753 15753]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
−
* BioCyc : META:ADENYLOSUCCINATE-SYNTHASE-RXN
+
* MetaNetX (MNX) Equation : MNXR104889
−
* MetaNetX (MNX) Equation : MNXR95495
+
* KEGG Reaction : R02101
−
* KEGG Reaction : R01135
+
* EC Number : 2.1.1.45
−
* EC Number : 6.3.4.4
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Adenylosuccinate synthase}}
+
{{#set: common name=Thymidylate synthase}}
−
{{#set: gene associated=EF0014}}
+
{{#set: gene associated=EF1576}}
−
{{#set: in pathway=map01100|map00250|map00230}}
+
{{#set: in pathway=map00240|map01100|map00670}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:36, 21 March 2018

Reaction TMDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Thymidylate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DUMP C9H11N2O8P[c] + 1.0 5,10-Methylenetetrahydrofolate[c] => 1.0 DTMP C10H13N2O8P[c] + 1.0 7,8-Dihydrofolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR104889
  • KEGG Reaction : R02101
  • EC Number : 2.1.1.45




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=TMDS&oldid=10801"